Candidatus Brocadia pituitae: BPIT_22080
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Entry
BPIT_22080 CDS
T07694
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03030
DNA replication
bpit03410
Base excision repair
bpit03420
Nucleotide excision repair
bpit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPIT_22080
03410 Base excision repair
BPIT_22080
03420 Nucleotide excision repair
BPIT_22080
03440 Homologous recombination
BPIT_22080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpit03032
]
BPIT_22080
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_22080
Enzymes [BR:
bpit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BPIT_22080
DNA replication proteins [BR:
bpit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BPIT_22080
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BPIT_22080
NER (nucleotide excision repair)
GGR (global genome repair) factors
BPIT_22080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BBO17916
LinkDB
All DBs
Position
complement(2514088..2516754)
Genome browser
AA seq
888 aa
AA seq
DB search
MSERFYIIDGHSQCYQAFYAITARLTTPAGKPANAVYGFTRMLQKLLREHRPEYVAVVFD
TRGTTHRHSSYREYKANRKPTPDELQVQIPLIYKIVRAFHIPVYAAKGYEADDIIGTLVK
LLSDKPVEVVIVTTDKDMEQLLNSRVKILHAKKGKMIDPEVLFNEKGIRPEQVVEVLALS
GDASDNIPGVPGIGNKTALELIQKWGSLESVLTNVNLISGKKRQENLRLFADQARLSQKL
LLLHCDIPITLSLSACKRNSIETTELKKLFRAYGFHTLLTDRVATAKTEDTRYQLVDTGE
KFHEFLAQLNTQRIIAIDLETTSTNPLMARIVGISLSWKEREAHYIPLMAPEGTARVNPD
IVLSQLRPVLEDENIKKIGQNIKYDALVLRKNNIFLQGIAFDTMIASYLLNPGKRNHNLD
DIAFEYLSYKTITTSEVIGSGKEQITMDKADVEKVCEYACQDADISFRLAGVMEPRLKES
TLSQLLQDVEVPLIYVLAEMEWNGICLDIHVLKEMSDILTVKLQQVEKEIYASAGYKFNI
SSPRQLSEILFEKLELPRLRRTKTGLSTDANVLTSLAWQHTLPKLVLEYRQLMKLKNTYI
DALPEMVNSDTGCIHTSFNQTVTATGRLSSSEPNLQNIPIRTEMGRQIRRAFIPRGNDAV
FLSADYSQIELRILAHFSGDEALVEAFHQDKDIHAAVAAAMYNVPIENVVPEMRRNAKAV
NFGIIYGLSEFGLSRDTGLSLEKAREFIDTYFALYKGVKGFRDTVIEEARTCGYVKTLFQ
RKRFVSDLRSKDKKLRNLSERIAVNTIIQGSAADLIKVAMNNIYAKLKKCDFGAKMLLQI
HDELLFEVQRNTLTQARFLVQEEMSHAVVLNVPIKVNIKTGINWMETE
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcgattctatattattgatggtcattcacagtgctatcaggccttttatgct
attacggcaagactgacaacccctgctggaaaaccggcaaatgcagtgtatggatttacg
cggatgctgcagaagttactcagggagcatcgtcccgaatatgtagcggtagtatttgat
acaagaggtactacccatagacatagcagttatcgtgagtacaaagcaaaccgtaaaccg
acgcccgatgaattgcaggtacaaattccgctgatttataaaattgtcagggcttttcat
attcccgtttacgctgctaaaggttatgaggcagacgatataatcggcaccctcgttaaa
ttactttctgataaaccggttgaagttgtcatagtgactacagataaggatatggaacaa
ttactcaattccagggtaaaaatattgcatgcaaaaaagggaaagatgattgacccggag
gttcttttcaatgaaaaaggcatacgaccagaacaggtggttgaagtgttggcactctcc
ggcgatgcttcggacaatataccgggggtgcccggcatcggcaataaaactgctttggaa
cttattcaaaaatgggggtcgctggaatctgtgcttaccaatgtaaatctcatttctgga
aaaaagaggcaggaaaatttgcggttatttgctgaccaggcaaggctttcccaaaaacta
ttgcttctgcattgtgacatccctatcaccctgagcttgagtgcatgcaagagaaattcc
atcgaaacgacagaactaaaaaaactgttcagggcgtatgggtttcatacccttcttacg
gatagagttgcaacggcaaagaccgaggatacacggtatcaactggtagacactggagaa
aagtttcatgaatttcttgcccaattgaatacccagaggataattgccatagatttagaa
acgaccagcacgaatccccttatggccaggatcgtggggatttcactttcttggaaggaa
cgggaagcgcattatataccactgatggcaccggaaggaacagcacgggtaaatccagac
atcgtgctttctcaactccgtcctgttttagaagatgaaaatattaaaaaaatcgggcag
aatattaaatacgacgccttggtactcagaaagaataacatttttttacaggggattgca
tttgacacgatgattgcttcctatctcctgaatccagggaagaggaatcacaaccttgac
gatattgcctttgagtatttatcgtataagaccataaccacatcagaggtgattgggtcg
ggaaaggaacaaatcaccatggacaaggctgatgttgaaaaggtctgcgaatatgcatgc
caggatgctgatatctcttttcgtttagctggtgtgatggaaccgcgtcttaaagaaagt
acgttatcgcagctcttgcaagatgtagaggtaccattaatttatgttttggctgaaatg
gaatggaatgggatttgtctagacattcatgttttaaaggagatgtccgatattttaact
gtgaaattgcagcaggtcgaaaaggaaatttatgcttcagcaggatacaagtttaatatc
agttcgccccggcagttgagtgaaattctttttgaaaaacttgaattaccccgtcttagg
cgcaccaaaacgggattgtcaacggatgcaaatgtcctgacctcccttgcgtggcaacat
accctccctaagttagtcctcgaataccgtcagcttatgaaattaaaaaatacgtatatc
gatgccttgccggaaatggtaaactccgatacgggctgcattcatacctcgtttaatcag
accgttacggcaacgggccggctcagtagcagtgagccaaacctgcaaaatattcccatt
cgcacagaaatggggaggcagattcggcgtgccttcatcccccgcggaaatgacgctgta
tttttgtcggcagattattcacagatagaattgcgcatcctggcgcatttttccggagat
gaggccctcgttgaggcatttcatcaggacaaggatattcacgctgctgttgccgcagca
atgtataacgttccgatagaaaacgtggttccagaaatgaggcgtaatgcaaaggcggtt
aactttggaataatttacggactgagtgaatttgggctttcccgtgataccgggctatca
ctggaaaaggcacgggagtttattgacacctattttgctttatacaagggagtaaaagga
tttcgagacacggttatagaagaagcaagaacctgtggttatgtaaaaacgctgtttcag
agaaaacggtttgtgtccgatcttcgttctaaagataaaaaactgagaaacttatcagaa
cgtattgctgttaataccattattcagggctcagcggccgatttaatcaaggttgccatg
aacaatatttatgcaaagttaaagaaatgcgactttggggcgaagatgcttcttcagata
catgatgaattgctttttgaggtgcagagaaataccctgacacaggcacgttttctcgta
caagaggaaatgagtcatgctgttgtcctgaatgttccgatcaaggtaaacataaagacc
gggataaactggatggaaacagagtga
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