Candidatus Brocadia pituitae: BPIT_23720
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Entry
BPIT_23720 CDS
T07694
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPIT_23720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpit03019
]
BPIT_23720
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_23720
Enzymes [BR:
bpit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPIT_23720
Messenger RNA biogenesis [BR:
bpit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BPIT_23720
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BPIT_23720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
HTH_24
ResIII
Sigma70_r4_2
HTH_11
Motif
Other DBs
NCBI-ProteinID:
BBO18080
LinkDB
All DBs
Position
complement(2702043..2704175)
Genome browser
AA seq
710 aa
AA seq
DB search
MYDLLQKYFGYTSFYPLQEDIIKEALAHRDVFVLMPTGSGKSLCYQLPALLFDGVTIVIS
PLIALMKDQVDGLLANGIPATFINSSLSYSEIDARRQKLLENELKILYVAPERLLMPEFL
EFLQGLKVCLFAIDESHCISEWGHDFRPEYRQLKVLKEKFPYVPVMALTATATQVVQEDI
IRQLNLSHNKVFKASFNRKNLYYQIKPKHEPFQQVLHYLKDRRTDSGIIYCQSRKTVETL
ASGLQAKGYRALPYHAGLTAEVRTDHQERFIRDDVEIIVATIAFGMGIHKPGVRYVIHYD
LPKSIEGYYQETGRAGRDGLPSDCVLFFSYADKFKIEHFIQQKEDEHEKRIAYKQLRELI
TYCEGNVCRRRLLLAYFGEQFEAPDCGGCDVCVEPKERFDGTIAAQKILSCVYRTGERFG
VNYIVDVLLGAKNQKVLQNRHDTLKTYGVGKEYAKVQWQSFIRELIQLGYLKLDGDEYPI
LKLHEKSRPVLLGAEKVFLIKPEEKLPVRKAEVSEVYDQTLFDRLRVLRKTLADQEGVPP
YVVFHDTSLKEMTIYYPQSLLDLRKISGIGDRKLVKYGKIFLEEIVKYCEQNNIISKQFA
PPPEEFPGKEPKTSTVQLTFDLYKQRLTIPEIAQKRGLTVSTIASHLEKLILDGEDISID
CFVTSERQQHIIEAFKESGLQALSPVKEKLGEGYSYEEIRLVRAKMILER
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacttactgcaaaaatattttggctatacgagcttctacccgcttcaggaagat
atcattaaggaggcgctggcacaccgggacgtctttgtcctgatgccgacagggagtggt
aaatccctgtgctaccaactgcctgcgcttctttttgatggcgtgaccattgttatctct
cccttaatagccttgatgaaagatcaggtggatggtttgctggccaatggtattccggcg
acgtttatcaatagttctttgagttattctgaaattgatgcccgaaggcagaagttacta
gagaatgaactcaagatcctgtatgtcgcgccggagaggcttctcatgcccgagtttctt
gaattcctgcaaggactaaaggtttgcctgtttgccatcgatgaatcgcattgcatttct
gaatggggacatgatttccgccctgaataccgccagttaaaagtgttgaaggagaaattt
ccctatgttcctgttatggccttaacagccaccgccacgcaagtagttcaggaggatatt
atcaggcaactgaatctgtcccataataaggttttcaaggcaagttttaacaggaagaat
ctgtattatcagataaaacccaaacacgaaccattccagcaagttctgcattacctgaaa
gaccgccggacggattcgggaatcatctattgccagagccgcaaaaccgtggaaaccctt
gcgtctggcttacaggcaaaaggataccgcgccttgccataccatgccggtcttacggct
gaagtccgaacggatcaccaggaacggttcatccgtgacgatgtggagatcattgtggca
acgattgcctttggcatgggcatccataaaccgggtgtgcggtatgtcatccactacgat
ttaccgaagagcattgaaggatattatcaggagacggggcgtgccggtagggatgggtta
ccaagtgactgtgtccttttctttagttacgccgacaagttcaagatcgagcacttcatt
caacagaaagaagatgaacatgaaaagcggattgcctacaagcaattgagggagctgata
acgtattgtgaaggcaatgtctgccggagaaggctattgctggcctattttggcgagcaa
ttcgaagcgccggattgtggcggttgcgatgtctgcgtggaaccgaaggaacggtttgat
ggaacgatcgctgcacaaaagatattatcctgtgtttaccggacaggcgaacggttcggg
gtaaattatattgtcgatgtcttgttgggcgccaaaaatcaaaaggtgttacagaaccgg
catgataccctgaagacctacggtgtcgggaaggaatatgcaaaggtgcaatggcagtcg
ttcatccgtgaattaattcagctcggatacttaaagttggacggggacgaatatcccatc
ctgaaactgcacgaaaagagccgtcctgtcttattgggcgcagaaaaggtgtttttgata
aaaccggaggaaaaactccctgtccggaaggccgaggtgagtgaagtctatgatcagacc
ctgtttgaccgtctgagggttttacgaaagacgctggcagatcaggaaggtgtccctccc
tatgtcgtcttccatgataccagcttaaaagagatgacgatctattatccgcaaagtttg
ctcgatttacggaagataagcggtatcggagatcgaaaattagtgaagtacggaaagata
tttctcgaagaaatcgtcaagtactgtgagcaaaacaacatcatctcaaaacaattcgct
ccgccacctgaagaatttccaggaaaagagccaaagacttctaccgttcaactgacattc
gatttgtataagcaacgtctcaccattcctgaaattgcgcagaaaagaggcctgacagta
tccaccattgcctctcatctggaaaagttgattctggatggtgaagacatttccattgat
tgctttgttacctcggaaaggcagcaacatatcatcgaagcattcaaagaatcaggtcta
caggcgctcagcccggtaaaagagaagttaggagaaggttactcctatgaggagataaga
ctcgtcagagcaaagatgattttagaaaggtaa
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