Candidatus Brocadia pituitae: BPIT_24750
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Entry
BPIT_24750 CDS
T07694
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BPIT_24750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpit03021
]
BPIT_24750
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_24750
Enzymes [BR:
bpit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BPIT_24750
Transcription machinery [BR:
bpit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BPIT_24750
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BPIT_24750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Blo-t-5
7TMR-HDED
PA2201_N
Motif
Other DBs
NCBI-ProteinID:
BBO18183
LinkDB
All DBs
Position
complement(2798403..2802512)
Genome browser
AA seq
1369 aa
AA seq
DB search
MADIMYDKINEYSSVKVSLASPEDIRSWSYGEVKKPETINYRTYRAEKDGLFCERIFGPE
RNWECFCGKYKGVKHKGIICDRCGVKITHSRVRRKRMGHISLAAPIVHIWFFKAMPSRLG
TLLGMKTTSLERIIYFQDYVVIDQGSTPLNEYQMLSEEEFKATKEKYGEQSFKAGMGAEA
IRALLQKLDLVALSNELREELNQTKSKQRAKEIIKRLEIVEAFRDSGNKPEWMVLSVVPV
IPPDLRPLVLLESGNFATSDLNDLYRRIINRNNRLKKLIDLNAPEVIIRNEKRMLQQAVD
ALFDNTRGKRPVLGSNNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKLH
QCGLPKKIALELFQPFIIRRLKELGLADTIKSAKKMLGRKDNEVWDILEEVVKRHPVLLN
RAPTLHRMGIQAFEPILVEGNAIKLHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAITLM
LSTNNIFSPASGDPIITPTQDIVLGCSYLTTSLQDVAGEKPKKFSDPEEVVYALALKRVH
LHTKIELRIRQTKIIKDKLGTEEPKNGLCKTTVGRVIFNNILPVGMPFYNYTLDLKGISR
IIQDCYKLLGREKTIALLDDIKEIGFKECTKAGLSFAITDIKMPEKKQEIIDKTQEEIEK
IQKLYRKGIITEGERYNQIIDTWTYAGERVAEEMLSELKNDVRDGKAYLNPVYLMSSSGA
RGSSQQLRQLAGMRGLMAKPSGKIIEAPIKANFREGLGVLEYFSSTHGARKGLADTALKT
ADSGYLTRKLADVAQNVVITADDCGTTNGITKSVVYRGEKVEVPLSKVITGRVARNNIVD
LVKDEVIVRENEVITEEKAKRIEALGYEKIKVRSPLTCEMSLGLCKNCYGMDLSRGQQVE
EGMAVGIIAAQSIGEPGTQLTMKTFHIGGTATRSVEESEIKAKRGGSIKYNNLTVVKNPQ
GKNVAINANGEILLIDSKGRQIDKHTIVLGAEILVRENDTVIAHQVLSRWDPHMIPILTE
MSGKIRFEDIVLGKTMRHESDVSTGVKRKVIMEHKGDLHPQIIIEDETGKILGLYPIPEK
AHIEVEEGDSVTAGTLLAKTPREISRTEDITGGLPRVAEIFEARKPKDPAVMSEIDGIVE
VGEKRRGKRTILVKSETGMEIEHLVPRGKHLKTHRGDRIKAGSPLVEGPLILQDILRISG
EEELQTYMLKEVQNVYRSQNVPIDDKHIEIIIAQMLRKVKVDDVGDTSFLPGQIVDKFRF
KNENKKIMEKGGKPATAKPLLMGITKASLQSDSFISAASFQETTKVLTRAALEGKVDGLV
GLKENVILGHLVPAGTGYKSYCSLSAVPTEAFVPEEGEKYEGKEIVAST
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcagacatcatgtacgataaaataaacgagtatagttcggtgaaagtatctcttgca
tccccagaggatatcagaagctggtcctatggagaggtaaaaaaacctgaaacgattaac
tatcgtacttatcgggctgaaaaagacggtctcttttgtgagcgtatttttggtccggaa
cgaaattgggaatgtttttgcgggaaatataaaggcgtaaaacataagggaattatttgt
gaccgttgtggcgtaaaaattacacactcccgcgtaagaagaaagcggatggggcacatc
agtttggccgcaccgattgtgcacatttggttcttcaaggcaatgccctcccgtttaggt
actcttttgggcatgaagactacttcgctggaaagaattatttattttcaggactatgtg
gttatagatcagggaagtacacctttaaacgaataccagatgctcagtgaggaagaattc
aaagcaacgaaagaaaaatatggagaacaatcatttaaggccggaatgggcgctgaggct
attcgtgcattgttgcagaaactcgatttggtagcgttatcaaatgaactgcgtgaggaa
ctcaatcaaacaaaatcaaagcagcgtgcaaaagagataattaagagactggaaattgtt
gaggcgtttagagattctggaaacaagcctgaatggatggttctatctgtagttccggtt
atacctcctgatttgaggccgttagtgctgctggagagtggaaactttgctacatcagat
ttaaatgatctttaccgaaggattattaatcgaaataatcgtttaaagaagctaattgat
ctaaatgctccggaagtaattatcagaaacgaaaagaggatgttgcaacaagctgtggat
gcgctctttgataataccagaggaaagcgtcctgtgttaggaagtaataacagacctttg
aagtcattaaccgatatgattaaggggaagcaggggcgtttccgggagaatttgcttgga
aagagggttgattattcagcgcgttcggtcattgtcgttggacctgagctgaaattgcat
cagtgcggtttgccaaaaaaaatagccttggaattgtttcagccttttatcatacggaga
ttgaaagaattaggactcgcagacacaatcaaaagtgcaaagaagatgttgggacgtaaa
gataatgaggtgtgggatatccttgaagaggtggtaaagagacatccggtattgcttaac
agggctcctacattgcataggatgggtattcaggcttttgaaccgatactggtagaagga
aatgcaatcaagctgcatcctctggtgtgccgtggtttcaatgcagattttgatggagat
cagatggcagtacatctccctctttccatagaggcgcaggtcgaagctattactttgatg
ctgtcaacaaacaacattttttctccggcctcaggtgatcccattataactccgacccag
gacatcgttcttggttgctcgtatcttacgacgagtttgcaggatgttgcaggagaaaag
ccaaaaaaatttagtgatcctgaagaggttgtctacgcattagctttgaaaagggtgcat
ttgcacacgaagattgagttaaggataaggcagacaaaaattataaaggataagctgggg
actgaagaaccaaagaatggtttatgcaaaactacggttggccgcgttatctttaacaat
atattacctgtggggatgccgttttataattatacgctcgatttgaaaggaatcagccgg
ataattcaggattgttataaacttcttggacgtgaaaaaacaatcgccttgttagatgat
attaaagagatagggttcaaggagtgtacaaaggctggtctttcatttgcgataacagat
ataaagatgcctgaaaagaagcaggaaattattgataaaacgcaggaagaaatcgagaag
atacaaaaattatataggaagggaattatcacggaaggtgaaagatataatcagattatt
gatacatggacgtatgcaggtgaaagagttgctgaggagatgttgagtgaactgaaaaac
gatgtgagggatggaaaggcatacttgaacccagtgtacttgatgtcatcatctggtgca
aggggtagttctcagcagctaagacagttagctggcatgcgtggtttgatggcgaaacct
tccggtaagattatcgaagctccgataaaggcgaattttagggaagggttaggtgttctg
gaatattttagctccactcatggtgcacgaaaaggattggcggatacagcattaaaaaca
gctgactctggttatttaacgagaaaattagcagatgttgctcaaaatgtggttattacg
gcggatgattgtggcacgactaatggtattacgaagagtgtagtttatcggggtgaaaaa
gtggaagtgccgctcagcaaagtaattacggggcgggtcgcaagaaataatattgtagat
ttggtaaaagacgaagtgattgtaagagaaaatgaagtaatcacggaagaaaaggctaag
aggatagaagctttaggatatgagaagattaaagtcagatcaccgttaacctgtgaaatg
tctttgggattgtgcaagaattgctatggaatggatttgtcaagaggacaacaggtggaa
gagggtatggcggtggggattatagcagcgcaatcaatcggtgaacctggtacgcagctt
accatgaagacattccatattggaggaaccgcaactcgttctgtggaagagtcggaaata
aaagcaaaacgcggcggtagtataaaatataataatttgactgtggtgaaaaatccacaa
gggaaaaacgttgccattaatgcaaatggtgaaatcttgcttattgattctaaagggaga
caaattgataagcataccatagtacttggggcggaaatattagttcgcgaaaacgatacg
gtgattgcccatcaagtattatcgagatgggatccccatatgatacccatattaaccgaa
atgtccggtaaaatccgttttgaagatattgtgcttgggaagacgatgcggcatgaatca
gatgtttctaccggagtgaagaggaaggttatcatggagcataaaggggatttacaccct
cagattattatcgaagatgagacgggaaaaatattaggcctctatccgattccggaaaag
gcacatattgaggttgaagaaggcgactctgttactgctggtacattgctggcaaagaca
ccgagggaaatttcaagaactgaagatatcacgggtggattgcctagagtagctgaaata
tttgaggctagaaaaccaaaagatccggccgtgatgagcgaaatagatggtattgtggag
gttggtgaaaagcggagaggaaaacgaacaatactggtcaagagtgaaacggggatggaa
atagagcatcttgtgccgaggggaaaacatttaaagacccataggggtgaccgtattaag
gcgggtagtccgctggtggaaggccctcttattttgcaggacatcttaagaataagtggc
gaggaagagttgcaaacctacatgttaaaagaggtacaaaatgtctatcgttctcagaat
gtaccaattgatgataagcatatagagataattattgcacaaatgctcaggaaagtgaaa
gttgatgatgtcggtgatacgagctttttgccaggacaaattgtcgataaatttagattc
aagaacgaaaacaaaaaaatcatggaaaagggtggaaaaccagcaaccgccaaaccattg
ttgatgggtataacgaaggcatcattacaatcagacagctttatatctgccgcttcgttt
caggagacgacgaaggtattgacaagggctgcactcgaaggcaaggttgatggtcttgtt
gggctaaaggaaaacgtcattcttgggcatctcgtaccagccggaactggatataaatct
tactgttcgctctctgcagtgccgactgaggcttttgtaccggaagaaggagaaaaatat
gagggtaaagaaattgtcgcatcaacttag
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integrated database retrieval system
