Candidatus Brocadia pituitae: BPIT_27060
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Entry
BPIT_27060 CDS
T07694
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03410
Base excision repair
bpit03430
Mismatch repair
bpit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BPIT_27060
03430 Mismatch repair
BPIT_27060
03440 Homologous recombination
BPIT_27060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_27060
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BPIT_27060
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BPIT_27060
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BPIT_27060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBO18414
LinkDB
All DBs
Position
3077227..3078963
Genome browser
AA seq
578 aa
AA seq
DB search
MIKRWVFFPPNQPLQTEIAGKLKISPLLAQVLINRGVADVASARSFLQPQIAALGDPSLL
PDIEKASIRINDAIRKGEKIVIYGDYDVDGLSATALMYRCLKLLGAEVGYYIPERLEEGY
GLNADAIRKLRESGADVILTVDCGINACKEADIARTCGIDLIITDHHRPGQEIPNAFAVV
NPKLHDSHHLFRDLSGVGIAFKLAWALGQFFSPQKKVSPAFRDFLLHAVGLVALGTIADV
VPLVGENRIITRYGLSALQHTEIPGLRALLDVADLSGINLDAFHVGYRLGPRLNAPGRIG
KAGIVVELLTTSSKERATEIANFLEQENKRRQEIQVDIMVSARKKILHELNLDETTAIVL
ADQAWHPGIIGIIASKMVEEFNRPTVMIAVTDDIGHGSARSIPSFHILEALESCRNKLLS
VGGHAQAAGLKIHPDNIDEFRDMLNRATSQRLCKTDLVRVLNIDAEITLSMLSKAVVAEL
ARLSPHGEGNPIPLFAATNIKIVGQPRRIGAKGQHLSFYVKQGDVAVRAVAFGMGEQIDR
LKQNGRTCSLAFTVKINTWMNGEQLELEVKDLKFDNEE
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaggtgggtatttttccctccgaaccagccgctgcaaacggagattgccggt
aaactcaagatatcgcccttattagcccaagtgcttatcaatcgtggagttgccgatgtc
gcatctgccagaagcttcctccagccacaaattgctgcactcggagatccttctttactt
cctgacattgaaaaggcatccattcgcatcaacgacgccatacgcaagggagaaaaaatt
gttatctatggcgattatgatgttgacggactgtcagctaccgcgctcatgtaccgatgc
ctgaaattgctgggggcagaggtgggttattacattccggagcgactggaagagggatac
ggtttaaatgctgatgcgattcgaaagctgagggaaagcggggcagacgtcatcctgacg
gttgattgcggtatcaatgcctgcaaggaggcggatattgcacgcacgtgcggtatcgat
ctgatcattaccgaccaccaccgccccggacaggaaatacccaatgccttcgccgtagtc
aatccgaaactacatgactcacaccatctgtttcgcgacctctccggcgtgggtattgcc
tttaaactggcgtgggctcttggacaatttttttcgccgcagaagaaggtgtctcctgcc
tttagggattttctgctacatgcagtagggttggtggcccttgggacaattgcggatgtg
gtgcccttggtgggagaaaaccgcatcattacgaggtatggcctgagtgcattgcaacac
acggaaatccccggattacgtgcccttctcgatgtagcagacctctccgggataaatctc
gatgcctttcacgtgggatatcgtttgggtccccgtttaaatgccccggggcgcattggg
aaggcaggaatcgtggttgaactgctgacgacatccagcaaggagcgggccacagaaatt
gctaattttctggaacaggagaacaagaggaggcaggaaatacaggttgatattatggtg
tcagccagaaaaaaaatattgcatgaattaaacctggacgaaactaccgcaattgtactg
gcggaccaggcctggcaccccgggattataggaattatcgcttcgaaaatggtagaagaa
tttaaccgtcctacggtgatgattgccgtaacggacgacatcggccacggttccgcacgc
tccatcccctcgtttcatatcctggaagcactggaaagttgcaggaacaagttgctttct
gtgggtggtcatgcccaggcggcaggtttaaagatacacccggataatattgatgaattt
cgcgatatgctcaatagggctacctctcaaaggctttgcaagacggacctggtgcgtgtc
ctgaacattgatgcagagatcacgctctccatgttgtcaaaggccgtcgtagcagaactg
gcgcgtctctcccctcacggcgagggaaatccaatccccttattcgccgccacaaacata
aagatcgttggacagccgcgccgcataggcgctaagggacaacacctgagtttctatgtc
aaacagggagacgttgccgtcagggctgttgcctttggcatgggagaacagatagaccgg
ctgaaacaaaacggaagaacgtgttccctcgcctttacggtaaaaatcaacacctggatg
aacggcgagcagcttgagctggaggtgaaagaccttaaatttgataatgaagaataa
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