Candidatus Brocadia pituitae: BPIT_27680
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Entry
BPIT_27680 CDS
T07694
Name
(GenBank) RNA polymerase subunit alpha domain protein
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BPIT_27680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpit03021
]
BPIT_27680
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_27680
Enzymes [BR:
bpit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BPIT_27680
Transcription machinery [BR:
bpit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BPIT_27680
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BPIT_27680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
RNA_pol_A_CTD
TPR_8
TPR_11
TPR_12
TPR_14
TPR_6
TPR_17
TPR_7
TPR_19
TPR_16
ANAPC3
TPR_CcmH_CycH
SAM_EPH
TPR_9
ARM_TT21_C
MIT
NatA_aux_su
HEAT_Nup120
ARM_TT21_5th
TPR_15
BTAD
EST1_DNA_bind
Swi5
HAT_Syf1_CNRKL1_C
COP9_hel_rpt
NPV_P10
DUF3475
Motif
Other DBs
NCBI-ProteinID:
BBO18476
LinkDB
All DBs
Position
3156719..3158077
Genome browser
AA seq
452 aa
AA seq
DB search
MPTADVDLDTLMKVESLSRETVTHIRKQVFSSKEIREKLDAKTASLRIGIKKVHDVNEAK
DMTLLLGILEWMIGNVREASEFLKEVKSRKIGVYYLGKCYQELGDYDHALECFERAQKTD
DEEFDICMDIAETKRLKGDNEDALKMIKRFSQSHGDNPDFHYQLGCCLDALGEYDDAFNH
YGQALRIDPNHAKSLFRIAFYYDLNGEDEKAIDSYEQCINLCPSHKNAFLNLGILYEDKG
SFDDAVYCFETVLDAEPNNPRALLFLKDAKASMGMYYDEEVSKKQGKESEVLNIPISDFE
LSVRSKNCLEKMNIRTLRDLTRITEIDLLSFKNFGETSLNEIKVILSQKGLRLGQALESD
SKPDVFGKNTETKASVIESISELELSARCRSALSKEGIETIADLVEQTEIALDQKGIKEN
HIAEIRERLAEFGLTLKTVGNGTPALNDSETE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcctacagcggatgtagatcttgatacactcatgaaggttgagtcattgtcaagggaa
accgtcactcatatcaggaaacaggtgttcagttccaaagaaatcagggaaaaactggat
gcaaagaccgcttcgctaagaatcggcataaaaaaggttcacgatgtgaacgaagcaaaa
gatatgacccttttattaggaatattagaatggatgatcggaaatgttcgagaggcttcc
gaatttctgaaagaggtgaaatcaagaaaaattggcgtttattatctgggcaaatgctat
caggaattgggcgactatgatcatgctctagaatgttttgaacgcgcccaaaaaaccgat
gatgaagaatttgatatttgtatggatattgccgaaaccaagagactaaaaggcgacaac
gaagatgccctgaagatgattaaacgtttttcccaatctcacggagataatcctgatttt
cattatcaactgggatgttgtctggatgcacttggcgaatacgatgatgcattcaatcat
tatgggcaggcccttcgaatagacccgaaccatgctaaatctctctttcgtatcgccttt
tattatgatcttaatggagaagacgaaaaagccattgactcctatgaacagtgcataaac
ttatgtcctagccataaaaatgcgtttcttaatctgggaattttgtacgaagataaaggc
agctttgatgatgcggtatattgttttgaaacagttttggacgcggaaccaaataatccc
cgggcattgctgtttctaaaggatgcaaaagcctccatgggaatgtattacgacgaggag
gtttcaaaaaaacaagggaaggaaagtgaggtattaaatataccaatctcagattttgaa
ctctcggtaagaagcaaaaattgcctggaaaaaatgaatattcgcactttgcgagacctg
acgagaatcaccgagatcgacctgctttcttttaagaattttggagagacctcactcaac
gaaatcaaggttattttgtcacaaaaaggattacgtttaggacaggcattggaaagcgac
agtaaaccggatgtttttggaaaaaataccgaaacaaaggcaagtgtcattgagtctatt
tctgaacttgaactatccgctcgatgcaggagcgccttgagtaaggaaggcattgaaaca
atcgcagatcttgttgaacaaacagaaatcgcattggatcagaaggggataaaagaaaat
catattgctgagatacgcgaaagattggctgaatttggtctgacattgaaaaccgttggc
aacggtacgccggcgttaaacgacagcgaaacagagtag
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