Candidatus Brocadia pituitae: BPIT_34820
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Entry
BPIT_34820 CDS
T07694
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03030
DNA replication
bpit03430
Mismatch repair
bpit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPIT_34820
03430 Mismatch repair
BPIT_34820
03440 Homologous recombination
BPIT_34820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpit03032
]
BPIT_34820
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_34820
Enzymes [BR:
bpit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BPIT_34820
DNA replication proteins [BR:
bpit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BPIT_34820
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BPIT_34820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF3275
Motif
Other DBs
NCBI-ProteinID:
BBO19190
LinkDB
All DBs
Position
3952886..3956356
Genome browser
AA seq
1156 aa
AA seq
DB search
MKNDAFIHLHVHSEYSLLDGACKIGDLVDKAVELKMPALALTDHGNMFGAVEFYEMARSK
EIKPILGYEAYVAQGSRFDKESKNGKETISHITLLAENNEGYRNLLKLTTSAYLEGFYYK
PRIDKTLLKTHSAGLICLSGCMTSEINRYLVHNRTEEASQVAQEYKDIFGPEHFYLEIQN
NGIEQQSKLVSDAAEIGRKLGIPLVATNDIHYMNMDDANAHDALLCINTGKHLSDMQRMR
FGTNEFYFKNFQEMHTVFRHIPEALENTAKIANRCNVEMSFGKMHLPKFTAQNGMTNSAY
LRKLCEEGAVQKYGSLTQHVRERLDYELKVIESTGFVDYFLIVWDFIHFAIQHRIPATGR
GSGAGSLVAYVLNITNIDPLENDLLFERFLNAERISMPDLDIDFCAEGREKVIQYVRQKY
GGDSNVAQIITFGTMKAKAVIRDVGRVMNIPLSEVDKVAKLIPNTLNITLKDALEQEPAL
KALYENEKHIHELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPLAKNGEVVTTQFYD
EILVDKIGLLKADFLGVRKLTVIDKALKLIRETTGEDIDLTKIPMDNRKTYELLSRGEVK
GVFQVETSRGFKELLKKLKPDAFADILPLVALYRPGPLQSGMVDSFINRKHGREEVAYLH
PSLEPLLKETYGVILYQEQVMRIANRLAGFTLNQADNLRKAMGKKKPEIMAKFKDQFING
AVANGIPKEIAASIFELMEYFAGYGFNKSHSAAYAVITYQTAYLKANYPVQYMVAQLSCE
KQNMDKIVDYIEDCRHMGIGVLPPDINESQNDFTISQGNKIRFGLGAIKNVGDKAIESIV
QSRAKGNRYTSILDLCKRVDMRVANKQVIESLIKSGCFDSLHDNRAKLIAGLDTAMQLGG
IANKERRKGQKSLFDIGSDLDMAVKGNTGAEADVKPWSEKEILQAEKESLGFYLSSHPLN
ACQQKIKQLSTVSSAEMSERADGEEIVVGGIIATLKPSVTKRGDPMMYITLEDMKGAAEC
VIFSKEMKLYQTLLNIDEIVFVKGQIGFQSTAPSVRIKEIIAEKDALKRLTKCITLRYEG
ACFDETKFMQLKEIIRKHSGTCPLFFEISTSEQTSTIIKTSSQYFVSVTDAFISCIKDLF
GPEALRLNQPEMLAMV
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatgatgcttttattcatctccatgtccatagtgagtatagtcttcttgacgga
gcctgcaaaattggcgatctcgttgataaggccgtagaattgaaaatgcctgcccttgcc
ctgacagatcacgggaatatgtttggcgctgtggaattttatgaaatggcaagatcgaaa
gaaataaaacccatattggggtatgaggcctatgtggcacaaggcagccgctttgataaa
gaatcaaaaaacggaaaggaaacgatcagtcacatcaccctccttgctgaaaataatgaa
ggctatcgcaatctgctcaagctcacgacatctgcataccttgagggtttttactacaaa
ccgaggatagataagacacttcttaagacacattccgcagggctcatctgcctcagtggt
tgtatgacctcggagatcaatcgttatttagtgcataatcgtacagaagaggcatcgcaa
gtagcacaggaatacaaagacatctttggaccggaacatttttacctggaaatccaaaac
aacggaatcgaacagcaatcaaagctagtatctgacgctgcagagataggcagaaaacta
ggcatccctcttgtcgcaacgaatgacatccactatatgaatatggatgacgctaatgct
cacgatgccctgctctgcattaataccggaaaacatctgtctgacatgcaaagaatgcgt
tttgggacgaacgagttttatttcaagaattttcaggagatgcacactgtcttccggcac
atacccgaagcccttgaaaatacggcaaaaatcgctaaccggtgtaatgtggaaatgtct
ttcgggaagatgcacctgcccaaattcactgcacaaaacggtatgaccaatagcgcctat
ctgagaaaactttgcgaggagggcgcagtgcaaaaatacggctctcttacacagcatgtc
cgtgaacgcctggactatgagctaaaggttatcgaaagcacgggatttgtggactatttt
ttaattgtatgggactttattcattttgccattcaacatcgtattcctgctacaggccgt
ggttccggcgccggcagcctcgtcgcttatgtgctgaacatcaccaacattgatcccctc
gaaaacgatctgttatttgagaggtttctgaatgcagagaggatctccatgcctgatctg
gatattgacttctgtgcggaaggccgtgaaaaggttatccagtacgttcggcaaaaatac
ggcggcgacagcaacgtcgcacaaatcatcacctttggaacaatgaaggcaaaggccgtc
atccgggacgtgggacgggtgatgaatatccctttatcagaagtggacaaggtggctaaa
ttgattcccaatacgctcaatataaccttgaaggatgccctggagcaggagcccgcatta
aaggcactgtatgaaaacgaaaagcatatccatgaactgttcgacatctccaaaaagctg
gaaggactctgccgtcacgcgtcggttcatgcggctggcattgttatttcagacgaaccg
ctaactgaatacgtccctttggcaaaaaatggcgaggtggttaccacgcaattttatgat
gaaatcctggtcgataaaatcgggttgctgaaggcagattttcttggtgtccggaaatta
accgttatcgataaagcactgaagctgattcgggaaactaccggagaggatattgatctg
acaaaaattcctatggataacaggaaaacgtatgaattattatcgcgcggggaagtgaag
ggggtcttccaggtagaaaccagccggggttttaaagaattgctcaaaaagctaaaaccc
gatgcctttgcagacatcttgcccctggtagccttgtaccggcctggcccattgcaaagt
ggaatggtagattcctttattaaccgaaagcatgggagagaagaggtcgcttaccttcat
ccttcccttgaaccgctcctgaaagagacatacggggtcatcttataccaggagcaggtc
atgcgtatcgccaaccggctggccggttttactttaaatcaggccgataaccttcgcaag
gcaatgggaaagaagaaaccggagattatggcaaaattcaaagaccagtttatcaacggt
gctgtcgcgaatggaatcccaaaagaaatagcggccagcatattcgaattaatggaatat
tttgcaggttatggatttaataagtcccattccgctgcctatgcggtaatcacttaccaa
accgcttatctgaaggcaaactatccggtccagtacatggttgcccaactcagttgtgaa
aaacagaacatggataagattgtggactatattgaggactgccgacatatgggcatcggg
gtgcttccccccgatatcaacgaaagtcaaaacgactttaccatctcccagggaaacaag
atacggtttggattaggggcgatcaagaatgtgggcgataaggcgatcgagtctattgta
caatcccgggccaagggaaatcgctatacctcaatcctggatctatgcaaacgggttgac
atgcgggtggccaacaaacaggtaatcgagtcgttgatcaaatccggatgttttgattcg
ctgcatgacaaccgggcaaaactcattgccggacttgatacggctatgcaactgggtgga
attgcaaacaaagaaaggcgaaagggacaaaaatccctgtttgatattggaagcgatctg
gatatggcagtaaaaggaaataccggggcagaagccgatgtgaagccatggtcagaaaag
gagatcctccaggcagagaaggaaagcctggggttctacctgagttcgcatcccttgaat
gcctgccagcaaaagatcaagcagctatctaccgtgtcttcagcagaaatgtcagaacgt
gctgatggagaagagatcgttgtcgggggtattattgccacccttaagccaagcgttacg
aaacggggcgaccccatgatgtatattaccctggaagatatgaaaggcgctgctgagtgt
gttatctttagcaaagaaatgaagttgtatcagaccctgttaaacatagatgagattgtt
ttcgtaaagggacagattggtttccagagcactgccccctccgtgaggataaaagagata
atcgccgaaaaggacgcactaaagcgtttaactaaatgcataacccttcggtatgaagga
gcgtgctttgatgagacaaaattcatgcagctcaaggaaatcatcaggaaacactcgggc
acatgtccgctcttctttgaaatcagtacatctgaacaaaccagcaccataatcaaaacg
tcgagtcaatatttcgtatcggtaacagacgcttttatctcttgtataaaagacctcttt
ggtcccgaagcactcaggcttaatcaaccagaaatgcttgcaatggtttga
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