Brachyspira pilosicoli B2904: B2904_orf2223
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Entry
B2904_orf2223 CDS
T02225
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpj
Brachyspira pilosicoli B2904
Pathway
bpj03410
Base excision repair
bpj03430
Mismatch repair
bpj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B2904_orf2223 (recJ)
03430 Mismatch repair
B2904_orf2223 (recJ)
03440 Homologous recombination
B2904_orf2223 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpj03400
]
B2904_orf2223 (recJ)
DNA repair and recombination proteins [BR:
bpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B2904_orf2223 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B2904_orf2223 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2904_orf2223 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DNA_ligase_aden
aBig_2
Motif
Other DBs
NCBI-ProteinID:
AFR71551
UniProt:
J9UK66
LinkDB
All DBs
Position
complement(2277840..2280011)
Genome browser
AA seq
723 aa
AA seq
DB search
MQKIDIDNLNPIIKELLKLRRVVSKEDIFDFFFQDIYSLSNPFNIRDMNAFVDRLKEAIE
YNEKILIYGDKDADGVTAASIIYNTLKAVTKNVEAFVPNHEVGYGLSKDVIESYANSGVS
LIITVDCGISNVEEVEFAREHSIDIIVTDHHDIPEILPNAYLIFNPKLSNTGFVSKNFSG
CAVAFKLMQAFVFSYTKLYNKDIIILDYEIDKNTDKLKRIRALKSTNFVYSDDVFGFELV
NNDNAYKSIYLDYYEEFLSEDEVLEELASYMFEGENVVLVLTGGEIRLKKLLRLYEKYEL
YLPEYDNVYDLLQLGANYGGVNIKSVKTLDEFALLLKVNIYKYDNILYRDLIIKMEIFRR
MYYLSQKQLQNYIKRESILVLFGTVADVVPLIEENRAYIKCALAELEKPNHIRYNVILER
IKLLNTKVDTQAVSWRLAPFINAAGRMGKPEYALRLLTSETREEAFQLSEEVYNLNETRK
SLTESNFNIVCEYIKENNCMSYPIIIVKSDLIDRGLTGLIAGKVLSQYGKTAVILYESKE
DGVCTGSIRSRGDDNARDMLEYSSVYLDKFGGHKNAAGFTVSVNNFEKFAKKIIKYASEE
NFNTSKDEKTYDLELDFKDINMQFAEYLELFEPYGFANEEPVFFTNRVTINSIEKINKNN
KIHLKLQLQKNGSRANAIIWSSSEEECSKLEASNFINISYKIKINRFNGSKEVKIYIENY
EIN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaattgacatagataatttgaatcctattataaaagagttgcttaaattaagg
agagtagtttcaaaagaagatatttttgattttttctttcaagatatatattcgctttct
aatccatttaatattagggatatgaatgcttttgtagataggctaaaagaagctatagag
tataatgaaaaaatattgatatatggcgataaagatgctgacggtgttactgctgcttct
ataatatataatactcttaaggctgttacaaaaaatgttgaagcttttgttcctaatcat
gaagtgggatatgggctttcaaaagatgtcattgaaagttatgctaattctggggtgagt
ttaatcattacggttgattgcggtatatcgaatgttgaagaagttgagtttgcaagagag
cattctatagatattatagtaacagaccatcatgatatacctgaaatacttccaaatgct
tacttaatatttaatcctaaactttcaaatactggttttgtttccaaaaacttttctggg
tgtgctgttgcatttaagcttatgcaggcatttgttttttcttataccaaactttataac
aaagatatcattatattagattatgagatagataaaaatactgataagttaaagagaata
agagcattaaagtctactaattttgtttatagtgatgatgtatttggctttgagcttgta
aataatgataatgcttataaatctatttatttagattattatgaagagtttttgtcggaa
gatgaagttttagaagagttagccagttatatgtttgagggggagaatgttgtattggtt
ttaactggcggagagattaggcttaaaaaacttcttagactatatgaaaagtatgagcta
tatttgcctgaatatgataatgtttatgatttgcttcagttgggtgctaattatggcgga
gttaatatcaaatcagtaaaaacattagatgagtttgctttgcttcttaaagttaatata
tataagtatgataatattctctatagagacttaataataaaaatggaaatttttagaaga
atgtattatttaagtcaaaagcaattgcaaaactatataaaaagagaatctatattagta
ttgtttggaacagttgccgatgttgtaccgcttattgaagagaatagggcttatataaaa
tgtgctttggcagaattggaaaagcctaatcatataaggtataatgtgatactagagaga
ataaaactattaaacactaaagttgatactcaggctgtaagctggagacttgctcctttt
attaatgctgcgggtagaatgggaaagcctgaatatgctttaaggcttttaacttctgaa
actagagaagaggcttttcaactgtctgaagaagtttataatttaaacgaaacaagaaaa
tctcttacagaaagcaattttaatatagtgtgcgaatatataaaagaaaataattgcatg
tcttatcctattataatagtaaagagtgatttaatagatagaggtttaacagggcttata
gctggtaaggttttaagtcaatatgggaaaactgctgttatactttatgaatctaaagaa
gatggtgtttgtacgggaagtattagaagcagaggtgatgacaatgcacgcgatatgctt
gaatattccagtgtttatttagataagtttggcgggcataaaaatgctgctgggtttact
gtgagtgtaaacaattttgaaaagtttgctaaaaaaattattaaatatgcttcagaagag
aattttaacacttcaaaagatgaaaagacttatgatttggaattagattttaaagatatt
aatatgcagtttgctgagtacttagagttatttgagccttatggttttgctaatgaagag
cctgtattttttacaaatagggttactataaactctatagaaaaaataaataaaaataat
aagattcatttaaaactgcaattacaaaaaaatggcagcagagctaatgctataatttgg
agttcatcagaagaagaatgctctaaattggaagcttcaaattttataaatatttcgtac
aagataaaaataaatagatttaatggcagtaaagaagtaaagatttatatagagaattat
gagataaattaa
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