Brachyspira pilosicoli B2904: B2904_orf515
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Entry
B2904_orf515 CDS
T02225
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpj
Brachyspira pilosicoli B2904
Pathway
bpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2904_orf515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpj03019
]
B2904_orf515
03016 Transfer RNA biogenesis [BR:
bpj03016
]
B2904_orf515
Enzymes [BR:
bpj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B2904_orf515
Messenger RNA biogenesis [BR:
bpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B2904_orf515
Transfer RNA biogenesis [BR:
bpj03016
]
Prokaryotic type
tRNA degradation factors
B2904_orf515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AFR69864
UniProt:
J9UR60
LinkDB
All DBs
Position
complement(505124..507103)
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AA seq
659 aa
AA seq
DB search
MKVIKLLRRIDKKGQVSIKDYKAEYAENKKDKLRFDKMLHKASSMGLIIKKGDILKLTKE
GKYYLDSSSNERDERQSSKKQELKKGSSKKTSKKENSTKTNIIEKPDIKVEINNAKKDAE
IVANAYNIPTDFPKKCLKEAKILPDSMENVGLEFDRIDLRDIRTVTIDGADSKDFDDAIS
VEKLNDGYKIGVHIADVSFFVAEGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLN
EGVSRFTMTVFITIDNKGNIKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLLELLK
NADDIKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEEFMLLANC
EVAKRLKNIKGAIYRVHDSPDSEKLDTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKP
DEKLLLTLLLRSMRQAIYDINNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEGAQ
NMKPSMQKMFDNCAKWCSRTERVAVECERSLYKVKAARFMKEKVGKEYNGIISGITKFGI
FVEIEDRGIEGLIRYADLRHHYHYDENEQAAYSNEEAKWYTLGDKIRIVVHRVNIEELFI
DFLPASEFDNALDDRDIIDSRDFLKKKKGSKNKKEIYSRKSKPFKNKSRKEKKKSKKKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgattaaattgttaagaagaatagataaaaaaggtcaagtaagcataaaagac
tataaagctgaatatgctgaaaataaaaaagataaattaagattcgataaaatgcttcat
aaggctagttctatggggcttatcataaaaaaaggtgatatattaaaactcacaaaagaa
ggaaaatactatttagattcaagcagtaatgaaagagatgaaagacaaagttcaaaaaaa
caagagttaaaaaaaggatcttccaaaaaaacatctaaaaaagaaaacagcactaaaact
aatattatagaaaaacctgacataaaagtagaaataaacaatgcaaaaaaagatgctgag
atagtagctaatgcatataatatacctactgattttccaaagaaatgtcttaaagaggca
aagattcttccagacagtatggaaaatgttggtcttgaatttgacagaatagatttaaga
gatataagaactgtaacaatagacggagctgattctaaagattttgatgatgctataagt
gtagagaaattaaatgacggatacaaaataggcgtgcatattgccgatgtaagttttttt
gtagctgagggttctgcattagacagggaagcaagaaagagaggaaatagcgtttattta
attgatacagtatatccaatgtttccacatgagctttcaaatggaatatgttcacttaat
gaaggtgtaagcagattcacaatgacagtgtttatcactatagataataaaggaaatata
aaagaaagcacttttcataaaagcgttataaagtcaagcagaagattaacttatgattat
gcacaagatgttttggacggtatagaacaagatgaagattggctattagaacttttaaaa
aatgctgatgacataaaaaaaatacttcttcaaaaaagaatagataatggaagtatagag
tttaaccttaatgaaacacaaataatattagataaaggcggaaacccaaaagactttttt
ataggtgagagaaaagagactcataagataatagaagagtttatgcttcttgcaaattgc
gaggttgctaagagattaaaaaatataaagggtgccatttatagagtgcatgacagtcca
gattctgaaaagctagacacatttagaagaatagcattcaacagaggctacagacttaca
actgacaatgaaggcaatttggattttcattcatttatagaatccattattggcaagcct
gatgaaaaacttctgcttaccttactcttacgctctatgaggcaagctatatatgatatt
aataatatagggcatttcggtcttggttttgaatattatactcactttacttcgcctata
agaagatatactgacttacttacacatagacttttaaaactatcattagaaggtgctcaa
aatatgaaaccttctatgcaaaagatgtttgataattgtgctaaatggtgctctagaaca
gagagagttgctgtggaatgcgagagaagtttgtataaagtaaaagctgcgaggtttatg
aaagaaaaagtaggcaaagaatacaacggcatcataagcggcatcactaaatttggtata
tttgttgaaatagaagatagaggaatagagggcttaataagatatgcagatttgagacat
cattatcattatgatgaaaatgagcaggcagcatacagcaatgaagaagctaaatggtat
actcttggagataaaataagaatagttgttcatagagtaaatatagaagaattatttata
gactttttgcctgcaagcgaatttgataatgcattagatgacagagatataatagacagc
agagattttttaaagaagaagaaaggcagtaagaataaaaaagaaatatactcaagaaaa
tctaaaccttttaaaaacaaaagcagaaaagaaaaaaagaaatctaaaaagaaaagataa
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