Burkholderia pseudomallei NCTC 13179: BBK_2633
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Entry
BBK_2633 CDS
T02894
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bpk
Burkholderia pseudomallei NCTC 13179
Brite
KEGG Orthology (KO) [BR:
bpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpk03019
]
BBK_2633 (hrpA)
Enzymes [BR:
bpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBK_2633 (hrpA)
Messenger RNA biogenesis [BR:
bpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBK_2633 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_23
NACHT
T2SSE
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AGZ27730
LinkDB
All DBs
Position
1:3004942..3008829
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AA seq
1295 aa
AA seq
DB search
MSGKRDEIARAIAAHPVVIVCGETGSGKTTQLPKICLALGRGLGAGGAGLIGHTQPRRLA
ASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTL
IIDEAHERSLNIDFLLGYLRQILPRRPDLKLIVTSATIDAERFARHFGSDERPAPVIEVS
GRLYPVEVRYRPIADDRPAAVRHAEGASSGRDRAKSAREAERDLMDGIVDAVDELCREGP
GDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFKASNARRIVLATNV
AETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPISQAAANQRAGRCGRVADGVCIR
LYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIESFPFIEPPPGRAIADGYQLLN
ELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREVLVIASALSVQDPRERPV
DAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSNRQLVDACRQHFLSHLRLREW
RDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNIGFKAEDEPHYLGARGIKFHL
WPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERIGAHLLKKSLSEPHWEKRPA
QVAAFERATLYGLTIYHRRRVAFGRQDPARARELFIRGALVDGEFDTKLAFFAHNRKLLA
DIEQLEHKSRRQDVLVDDELIHAFYDQAIPAGIHTGAAFERWYRDEVSKSGQPEDKLRLL
YLSRDDLMRHEAAGVTTELFPKRVTMAGVEMALAYHFEPGSPRDGVTLAVPLFALNQVDA
RRAEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPEYAAGFVERAGRERFGAGGLVDALIA
DVREQTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAMGRNLAQLRAELGAQAQQHFQ
KIAAAATLAPAGEPAAAAAGASGARARRAPLGAPPRAAEPAAQAGAAAGATALYENLTTW
NFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKE
PIKYLEKNLPGLREMAMQYMSLGTQDELRDQLIATALDRACLQEPLPADDASFHARRDEG
RSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHADMQGQLAALVGKRFVVDTPY
AQLAHFPRYLKGIALRIDKLKADPARDARQAAELQPLAQHYQRSVAQRGGVADARLAEFR
WLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcacccggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctggcgctcggc
cgcggcctcggcgcgggcggcgcgggcctgatcggccacacgcagccgcgccggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaggtggtc
ggctacaaggtgcgcttcaccgacaacctcgccccgggcgcctcggtcaagctgatgacg
gacgggatcctgctcgccgagacgcagaccgacccgctgctgaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctcggctacctccgg
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcc
gagcgcttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctgtatccggtcgaggtgcgctaccggccgatcgccgatgaccggccggccgcc
gtccggcacgcggaaggcgcgagctcgggccgcgatcgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccc
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgcggccgaggcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtccgcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgaaacgtcgctgaccgtgccgggcatccgctatgtcgtcgacacgggcttggcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagccgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcgtctgcatccgc
ctctacgaggaaagcgatttcgctggccgcgcacgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcgtcggtgatcctgcggatgaaatcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgccgggccgcgcgatcgcggacggctatcagctgctcaac
gagctcggcgcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgg
ctgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgctg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgagcgcccggtc
gacgcgcaggagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgagttc
cttcagtggctgcggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgacgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcggctgaacgaa
gccgatgcgacgttcgagcagatccatctgtcgctgttgacgggcctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactacctcggcgcgcgcggcatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagcccgaatggatcgagcgg
atcggcgcgcatctgctgaagaaatcgctgtccgagccgcactgggagaagcggcccgcg
caggtcgccgcgttcgagcgcgcgacgctgtacgggctcaccatctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgcgagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaaatcgcgccgccaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccggccggcattcacacgggcgccgcgttcgag
cgctggtatcgcgacgaggtgagcaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgagctgttt
ccgaagcgcgtgacgatggcgggcgtcgagatggcgctcgcgtaccacttcgagccgggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgaatggctcgtgcccggcatgctcaaggagaaggcgcatctgctgctgaaa
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccggagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagcgcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gacgttcgcgagcagacgcaggtcgcgacgaaaacgtccgatttcaagctggagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcaactcgcgatg
gggcgcaatctcgcgcaactgcgcgcggaactgggcgcgcaggcgcagcagcacttccag
aagatcgccgccgcggcgacgctcgcgccggcgggcgagcccgccgcggcggccgccggc
gcgagcggcgcgcgggcacggcgcgcgccgctcggcgcgccgccgcgggcggccgagccg
gcggcgcaagcgggcgcggccgccggcgcgaccgcgctctacgagaacctgacgacgtgg
aacttcggcaagctgccggaactcctcgaaatccgccggcgcggcgagacgctgttcggc
tacccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgattcgcccgac
gaggcggcgcggatccaccgcgcgggcctgcggcgcctgttcgcgctgcaactgaaggag
ccgatcaagtatctggagaagaacctgccggggctgcgcgagatggcgatgcagtacatg
tcgctcggcacgcaggacgagctgcgcgaccagctgatcgcgaccgcgctcgaccgcgcg
tgcctgcaggaaccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggc
aggagccgcctgaatctgctcgcgcaggagatcgcgcggctcgtcgggcagatcctcgcc
gagtacgcggggctcgcgaagaagctcgcgcaggccaagccgttcccggccgcgcacgcg
gacatgcagggccagctcgccgcgctcgtcggcaagcgcttcgtcgtcgatacgccttac
gcgcagcttgcgcacttcccgcgctacctgaagggaatcgcgctgcgcatcgacaagctg
aaggccgatcccgcgcgcgacgcgcggcaggcggccgagctgcagccgctcgcgcagcat
tatcagcgctcggttgcgcagcgcggcggcgtcgcggacgcgcggctcgccgaattccgc
tggctgctcgaggagctgcggatctcgcttttcgcgcaggagctgcgcacgccgatgccg
gtatcggtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
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