Burkholderia pseudomallei NCTC 13179: BBK_401
Help
Entry
BBK_401 CDS
T02894
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpk
Burkholderia pseudomallei NCTC 13179
Pathway
bpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBK_401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpk03019
]
BBK_401
Enzymes [BR:
bpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBK_401
Messenger RNA biogenesis [BR:
bpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBK_401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGZ29801
LinkDB
All DBs
Position
1:complement(490236..491681)
Genome browser
AA seq
481 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA
EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRTLSLETLALDLPRHRHDDRGGRRERDRDERRGAPAGRRSAGG
ERTHHPRREAPIDDFFLKPYVPSPSANQPDEAKPVQPEKKAPKQPLAALLGGFGMPRKTS
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccaagcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaggcgattgccgagcagggctatacgacgccgacgccgatccaggcgaag
gcgattcccgtcgtgctgtccggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagtttctcgctgccgatcatccagcggctgctgccgcaggcgaacacgagc
gcgtcgcccgcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgagcttgcc
gatcaggtcgccgcgaacgtgcacgcgtatgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaacccgcaaatggccgagctgcgccgcggcgtcgagatc
ctgatcgcgacgcccgggcgcttgctcgatcacgtccagcagaagaccgcgaatctcggc
caggtgcagatcctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctcccc
gatctgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgcttttctcggcg
acgttctcgcccgagatcaagaagctcgcgtcgacctacctgcgcaatccgcagacgatc
gaggtcgcgcgcagcaacgcggccgcgtcgaccgtcacgcagatcgtctacgacgtcgcc
gaaggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgctcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgccttgcgcgccagatcgagcgcgac
ggcatcatcgcggccgcgattcacggcgaccgctcgcagagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgaccgacgtcgccgcgcgcggc
ctcgacatcgccgaattgccggccgtcatcaatttcgacctgccgttcaacgcggaagac
tacgtgcaccggatcggccgcacggggcgtgcgggcgcgtcgggtgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgacattgagaaactgatcaagcggacgctg
tcgctcgaaacgctcgcgctcgatctgccgcgccatcgccacgacgatcggggcggccgc
cgcgagcgcgaccgcgacgagcgccgcggcgcgccggccggccgccgttcggcgggcggc
gagcgcacgcatcatccgcgccgcgaagcgccgatcgacgattttttcctgaagccgtac
gtgccgtcgccgtccgcgaaccagccggacgaggcgaagcccgtgcagccggagaagaag
gcgccgaagcagccgctcgccgcgctcctgggcggattcgggatgccgcgcaagacgtcg
tcgtga
DBGET
integrated database retrieval system
