Burkholderia pseudomallei 1106a: BURPS1106A_3006
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Entry
BURPS1106A_3006 CDS
T00480
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bpl
Burkholderia pseudomallei 1106a
Pathway
bpl03030
DNA replication
bpl03430
Mismatch repair
bpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BURPS1106A_3006
03430 Mismatch repair
BURPS1106A_3006
03440 Homologous recombination
BURPS1106A_3006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpl03032
]
BURPS1106A_3006
03400 DNA repair and recombination proteins [BR:
bpl03400
]
BURPS1106A_3006
Enzymes [BR:
bpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BURPS1106A_3006
DNA replication proteins [BR:
bpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BURPS1106A_3006
DNA repair and recombination proteins [BR:
bpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BURPS1106A_3006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ABN92346
UniProt:
A3NY28
LinkDB
All DBs
Position
I:complement(2943324..2944469)
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AA seq
381 aa
AA seq
DB search
MSASPPPHPAIDTPLAFVDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPP
FIQQLTGITDAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP
DVLCTVRLSRALFPRESRHGLDALIERHALAPSARHRALADADLIWQFWQKLHAVIPAEQ
LSEQIVRTTRRFRLAGALTEAHLESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLT
GERRSSKETRLAQLVRRVEWRETGGELGALLAEADWIASLAPSFNRRSDRGATGDAHWPF
GGPVAFEERGESRVFHVIDQWRYVGAASSIERAATLAADARAAGEGARSAAPAVRRILQT
HLARGLQLIPIPLAGAAPAAA
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcgccgccgccgcatcccgcgatcgacacgccgctcgcgttcgtcgacctc
gaaacgaccggcggatcggccgccgagcatcgcatcaccgaaatcggcgttgtcgtcgtg
aacgcgaacggcgtatcgacatggacgacgctcgtcgatccgcagcagccgattcccccg
ttcatccagcagctcacgggtatcaccgacgcgatggtgcgcggcgcgccgacgtttgcc
gacattgcgggcgcattgttcgagcggctcgacggcaaacttttcgtcgcgcacaacgcg
agcttcgaccgaggctttctgcgcgcggagttcgagcgagcgggcatcgcattcaatccc
gacgtgctttgcacggtgcggctgtcgcgcgcgcttttcccgcgcgagtcgcgccatggg
ctcgacgcgctgatcgagcggcacgcgctcgcgccgtcggcacgccaccgggcgctcgcc
gacgcggatctcatctggcagttctggcaaaagttgcacgccgtgataccggccgagcaa
ctgagcgagcagatcgtgcgcacgacgcgccggttcaggctcgcgggggcgttgacggaa
gcgcatctggaaagcgcgcccgccggctgtggcgtctacgcgctgttcggcgacggcgac
gcgccgctctatgtcggccgaagcgtgcgggttcgccagcggctgcgcgcgctgctgacg
ggggagcggcgctcgtcgaaggaaacacggctcgcgcagctcgtgcggcgggtcgaatgg
cgcgagacgggcggcgagctcggcgcgctgcttgccgaggcggactggatcgcgtcgctt
gcgccgtcgttcaaccggcggtcggaccgcggcgcgacgggcgatgcgcattggccgttc
ggcgggccggtcgcgttcgaggagcgcggcgaatcgcgtgtttttcatgtgatcgatcag
tggcgctacgtcggcgcggcatcgtcgatcgagcgggcggcgacgctcgcggccgacgcg
cgcgcggcgggcgaaggcgcgcggagcgccgcgccggcggtgcgccgcattctgcagacg
catctcgcgcgcgggcttcaactgattccgattccgctcgcgggcgccgcgcctgccgcc
gcctaa
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