Burkholderia plantarii ATCC 43733: bpln_1g08320
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Entry
bpln_1g08320 CDS
T04139
Name
(GenBank) Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bpla
Burkholderia plantarii ATCC 43733
Pathway
bpla03030
DNA replication
bpla03430
Mismatch repair
bpla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bpln_1g08320
03430 Mismatch repair
bpln_1g08320
03440 Homologous recombination
bpln_1g08320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpla03032
]
bpln_1g08320
03400 DNA repair and recombination proteins [BR:
bpla03400
]
bpln_1g08320
Enzymes [BR:
bpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
bpln_1g08320
DNA replication proteins [BR:
bpla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
bpln_1g08320
DNA repair and recombination proteins [BR:
bpla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
bpln_1g08320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Cho_C
GIY-YIG_UvrC
Rv2179c-like
GIY-YIG
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ALK29655
LinkDB
All DBs
Position
1:968315..969469
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AA seq
384 aa
AA seq
DB search
MSDSSSSLSSFFQASGGPLAFVDLETTGGSAAEHRITEIGVVEVGPDGVSTWNSLIDPHQ
PIPAFIQQLTGITDAMVRGAPSFASIAAELYARLDGRLFIAHNASFDRGFLRAEFERAGY
AFNPDVLCTVRLSRALFPRESRHGLDALIARHALVPNARHRALADADLVWQFWRHLHDAI
PAEQLVEQIAQTTRRYRLAGDLTEDDLERAPAGFGAYALFGEGDAPLYVGRSVRVRNRLR
ALLTGERRSARERRLAEQVRRLEWRETGGELGAMLAEANWIAELAPAFNRKAGDARRGTA
GEPWPFDGPVAIVDGGAPATYHVVDRWRYLGTVAGIEAARALAAAAGSDGRFNATVFRIL
QTHLARGVPTIELALQAPVPVAPQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattcgtcttcgtcgttgtcttcgtttttccaggcctccggtggcccgctcgct
ttcgtcgacctcgagacgaccggcggctccgcggccgaacaccggattaccgagatcggt
gtcgtcgaggtcggtcccgacggcgtctcgacctggaactcgctgatcgatccccaccag
ccgatcccggccttcatccagcagctgaccggcatcaccgatgcgatggtgcgcggcgcg
ccgagcttcgcctcgatcgcggccgagctttacgcgcggctcgacgggcggctcttcatc
gcgcacaacgcgagtttcgaccgcggcttcctgcgcgccgaattcgagcgcgccggctat
gccttcaatcccgacgtgctctgcacggtgcgcctgtcgcgcgcgcttttcccgcgcgaa
tcgcgccatgggctcgatgcgctgatcgcacgccacgcgttggtgccgaacgcgcgtcac
cgcgcgctggccgacgccgatctcgtctggcagttctggcgacacctgcacgacgcgatt
ccggccgagcagcttgtcgagcagatcgcgcagacgacgcgccgctaccggctggcgggc
gacctgaccgaggacgacctcgagcgcgcgccagccggctttggcgcctatgcgctgttc
ggggagggcgacgcgccgctctacgtcgggcgcagcgttcgggtgcgcaaccgcctgcgc
gcgctgctcacgggcgagcggcgctcggcgagggagcggcggctcgcggagcaggtgcgg
cgcctggaatggcgcgagaccggcggcgaactcggtgcgatgctggccgaggcgaactgg
atcgccgaactcgccccggccttcaaccgcaaagccggcgacgcgcggcgcggcaccgcc
ggcgagccctggccgttcgacggcccggtggcgatcgtcgacggcggcgcaccggcgaca
tatcacgtggtcgatcgctggcgctatctgggcactgtcgccggcatcgaggccgcgcgt
gcgctggccgccgcggccgggagcgacggccggttcaatgccaccgtgttccggattctg
cagacccatctcgcgcgcggcgtgccgaccatcgagcttgcattgcaggcccctgtgccg
gtggcaccgcagtaa
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