Burkholderia plantarii ATCC 43733: bpln_1g10260
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Entry
bpln_1g10260 CDS
T04139
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bpla
Burkholderia plantarii ATCC 43733
Pathway
bpla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
bpln_1g10260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpla03400
]
bpln_1g10260
Enzymes [BR:
bpla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
bpln_1g10260
DNA repair and recombination proteins [BR:
bpla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
bpln_1g10260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
DUF374
Motif
Other DBs
NCBI-ProteinID:
ALK29848
LinkDB
All DBs
Position
1:1195060..1198821
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AA seq
1253 aa
AA seq
DB search
MTNVSVSAARAPVELDVFACALDGVNQIEASAGTGKTWNICALYVRLLLEHDLEADQILV
VTFTKAATAELHERIRARLAQLAHVLDTGDDGGDPFVAKLFETTLGAQGGIDVEVAGKRI
RRALRKFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDASLRFELAADFWYSRVEP
VAAAYPAFAAWLVEHRAGPDALDAQLARRLKKPLAELRFDGLTPLHDTGGPDADAIARAR
HDEAAALWHGGRARIAALLDDAQPSLNQRSHKPEAVADALAAWATYFGEAEMADGAADHS
AAPAPLPKAALKLTRGVLEKATKKGGTTPEHPFFEAAEVLDAALAAAEDAQRGRWLSLIA
AWLAEAPARLVEKKRTRRVVSFDDLLANLHHALATHPWLADTLRRRYPAALIDEFQDTDP
LQFEIFDTIFAPDGPLFLVGDPKQAIYSFRAADLHTYLAARASARSCYTLAVNQRSTPAI
VDACNRVFTANPHAFVLDDLDYPPVRAGTRQRAPFVDGTDPRAGAGDFRIWTLPEGDAML
AKRDAQWQAAQSCAAEIARLMRGARAGAVRLGETPLAPSDIAVLVQTHRQGSIVKRVLAA
WGIGSVELAQASVFATPDAEQLERVLAAVDAPGDLRRLRAALATDWFGLDAAALWRLEQG
DAPAGAAAGADAMSWVERFSRYRLLWRERGFAVMWRTLARELRIAERLLDGAGGERRVTD
VNHLAELTQARASAQPGIAPTLRWLAAQRRAGGGEDAQLRLESDRNLVQIVTVHKSKGLE
YAVVFCPFLNDGRLHEPREEALPDAREYHDETGAAVLHYGCDEAAAEMAAAQARREQAAE
RARLVYVALTRAVYRCYLVAGVYQAARSTREARRSVLNWLVAGGGHDFDAWLDTPPEADE
LAASWRRLADGPISIEPLPAVPAREPLAAGHDADALGGARHAARFLRDAWRIASFSSLTA
SLAREQEGVAVLPDEALRPDHDALAAAVDPMPRLDDGAAGTGAPAEPDGDDIVAFPRGAA
AGECLHLLFELSAFDRADSWPEAARRALHERPVEAEPTLGERLPAMMTRLVADVVATELV
PGLRLDALDPRRRLNEMAFLFPAASLDFLALRELLSAHGYPDVALESGTLAGFLKGFIDM
IVEHDGRFWIVDWKSNHLGATPDAYGPAALDAAMADHAYHLQALLYTVALHRYLRVRLPG
YDYDTHMAGYLYLFVRGVRPDWRSGGAPAGVHAKRASRELVDALDALMRKERG
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgtctccgtttccgccgcccgggcgcccgtcgaactcgacgtgttcgcctgc
gcgctcgacggcgtgaaccagatcgaggcgtcggccggtaccggcaagacctggaacatc
tgcgcgctctacgtgcggctgctgctcgaacacgatctcgaggccgaccagatcctcgtc
gtcacgttcaccaaggcggccacggccgagctgcacgagcgcattcgcgctcgcctcgcg
cagctcgcgcacgtgctcgacaccggcgacgacggcggcgatccgtttgtcgcgaagctg
ttcgagaccacgctcggggcgcagggcggcatcgacgtggaggtggccgggaagcggatc
cgccgcgcgctgcgcaagttcgaccaggcggcgatccacaccatccacgcgttctgccag
cgcgcgctgcaggaggcgccgttcgccgcggcgatgccgttcgcgttcgagatggaggcc
gacgacgcgtcgctgcgcttcgaactcgcggccgacttctggtactcgcgcgtcgagccc
gtggcggccgcgtatccggcgttcgcggcgtggctcgtggagcatcgcgccgggccggac
gcgctcgatgcgcagctcgcgcggcgcctgaagaagccgctcgccgagctgcgtttcgac
ggcctgacgccgctgcacgacacgggcgggcccgatgccgacgccatcgcgcgcgcgcgt
catgacgaggccgccgcgctctggcatggcgggcgcgcgcgcatcgccgcgctgctggac
gacgcgcagccgtcgttgaaccagcgctcgcacaagcccgaggcggtggccgacgcgctg
gccgcgtgggccacctatttcggtgaggccgagatggcggacggcgccgcggaccactcg
gccgcccccgcgccgctgccgaaggcggcactcaagctcacgcgcggcgtactcgagaag
gcgacgaagaagggcggcaccacgcccgagcatccgttcttcgaggcggccgaggtgctc
gacgcggcgctggccgcggccgaggacgcgcagcgcgggcgctggctctcgctgatcgcc
gcgtggctggccgaggcgccggcgcggctcgtcgagaagaagcgcacgcgccgcgtggtg
tcgttcgacgatctgctcgcgaacctccatcacgcgctggccacgcatccgtggctggcc
gacacgctgcggcgccgctatccggccgcgctgatcgacgagttccaggacaccgatccg
ctgcagttcgagatcttcgacacgatcttcgcgccggacggcccgctgttcctggtgggc
gacccgaagcaggcgatctacagcttccgcgcggccgacctgcatacctatctggccgcg
cgcgcgagcgcgcgctcgtgctacacgctggcggtgaaccagcgctcgacgccggccatt
gtcgatgcctgcaaccgcgtgttcacggcgaacccgcatgcgttcgtgcttgacgatctc
gactacccgccggtgcgcgccggcacgcgccagcgcgcgccgttcgtcgacggcaccgat
ccgcgcgcgggcgcgggcgacttccggatctggacgctgcccgagggcgacgcgatgctg
gccaagcgcgacgcgcaatggcaggccgcgcagtcctgcgcggccgagatcgcgcggctg
atgcgcggcgcgcgcgccggcgcggtgcggctcggcgagacgccgctcgcgccgtccgac
atcgccgtgctggtgcagacgcatcggcagggcagcatcgtcaagcgcgtgctggccgcc
tggggaatcggcagcgtcgagctggcgcaggcgtcggtgttcgcgacgccggacgccgag
caactcgaacgcgtgctggccgcggtcgacgcgccgggcgacctgcgccggctgcgcgcg
gcgctcgccaccgactggttcgggctcgacgccgcggcgctgtggcggctcgaacagggc
gacgcgcccgccggcgcggcggccggggccgacgcgatgagctgggtcgagcgcttctcg
cgctaccggctgctgtggcgcgaacgcggcttcgcggtgatgtggcgcacgctcgcgcgc
gagctgcggatcgccgagcggctgcttgacggcgccggcggcgagcggcgcgtgaccgac
gtgaaccatctcgcggagctcacgcaggcgcgcgcgtcggcgcagcccggcatcgcgccg
acgctgcgctggctcgccgcgcagcgtcgcgcgggcggcggcgaggatgcgcagctgcgg
ctcgaatcggaccgcaacctggtgcagatcgtcaccgttcacaagtcgaaggggctcgaa
tacgcggtggtgttctgcccgttcctcaacgacggccggctccacgagccgcgcgaggag
gcgctgcccgacgcgcgcgagtatcacgacgagaccggcgcggcggtgctgcactacggc
tgcgacgaggccgccgccgagatggccgccgcgcaggcgcgccgcgagcaggccgccgag
cgcgcgcggctcgtctacgtggcgctgacgcgcgccgtctatcgctgctatctggtggcg
ggcgtctaccaggcggcgaggtcgaccagggaagcgcggcgcagcgtgctgaactggctc
gtggccggcggcggccacgatttcgacgcgtggctcgacacgccgccggaggccgatgaa
cttgccgcgagctggcgccggctcgccgacggcccgatctcgatcgagccgctgccggcg
gtgccggcccgcgagccgctcgcggccggccacgacgccgatgcgctgggcggcgcgcgg
catgccgcgcggttcctgcgcgacgcatggcggatcgcgagcttcagctcgctcaccgcc
tcgctcgcgcgcgagcaggagggtgtggcggtgctgcccgacgaggcactgcggcccgat
cacgacgcgctcgcggcggccgtcgatccgatgccgcgcctcgacgacggcgcggccggc
accggcgcgcccgccgagcccgacggcgacgacatcgtcgcgttcccgcgcggcgcggcg
gcgggcgagtgcctgcacctgctgttcgagctgagcgcgttcgaccgcgccgacagctgg
cccgaggcggcccggcgcgcgctgcacgagcggcccgtggaggccgagccgacgctcggc
gagcggctgccggcgatgatgacgcggctggtggccgacgtggtggcgaccgagctggtg
ccgggcctgcggctcgacgcgctcgacccgcgcaggcgcctgaacgagatggcgttcctg
ttcccggccgcgtcgctcgatttcctcgcgctgcgcgagctgctgagcgcgcacggctat
cccgacgtcgcgctcgaatcgggcacgctcgccggcttcctgaagggcttcatcgacatg
atcgtcgagcacgatggccgcttctggatcgtcgactggaaatcgaaccatctcggcgcg
acgcccgatgcctacgggccagccgcgctcgacgcggcgatggccgatcatgcctaccat
ctgcaggcgctgctctacacggtggcgctgcatcgctacctgcgcgtgcggctgcccggc
tacgactacgacacgcacatggcgggctacctttacctgttcgtgcgcggcgtgcggccc
gactggcgcagcggcggcgcgcccgccggcgttcacgcgaagcgcgcctcgcgcgaactc
gtcgacgcgctcgacgccctgatgcgcaaggagcgcggatga
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