Burkholderia plantarii ATCC 43733: bpln_1g27690
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Entry
bpln_1g27690 CDS
T04139
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpla
Burkholderia plantarii ATCC 43733
Pathway
bpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
bpln_1g27690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpla03019
]
bpln_1g27690
Enzymes [BR:
bpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
bpln_1g27690
Messenger RNA biogenesis [BR:
bpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
bpln_1g27690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALK31535
LinkDB
All DBs
Position
1:complement(3264732..3266222)
Genome browser
AA seq
496 aa
AA seq
DB search
MSDAAVTSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKVRQTLLFSATFSPEIKKLASTYLINPQTIEVARSNATATNVTQIVYDIP
EGDKQAAVVKLIRDRALKQVIVFCNSKLGASRLARQLERDGVIATAIHGDRSQNERMQAL
DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRDLPLQPLAIDAPVRARREHGERSERGERSERGERSERGERGS
RDESRAPRRAHGGERSHHHHSRREAPIDEFFLKPYEPAPSARQPEEATKPAQPEKKSKQP
LAALLGGFGMPRRSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgcagcagtcacgtccgtcgatgcaactttcgatcagttcggcctcgcgccc
gacattctgaaggccattgcggaacagggctatacgacgcccacgccgatccaggcgaaa
gcgattccagtcgtgctgtccgggcgcgacgtgatgggcgccgcgcagacgggcaccggc
aagaccgccagcttctcgctgccgatcatccagcggctgctgccgcaggccaacaccagc
gcctcgcccgcgcgccacccggtgcgcgcgctgatcctcacgccgacgcgcgagctggcc
gaccaggtggccgccaacgtccatgcctacgcgaagcacacggcgctgcgcagcgccgtg
gtgttcggcggcgtcgacatgaacccgcagatggccgagctgcggcgcggcgtcgagatc
ctgattgccacgccgggccggctgctcgaccacgtgcagcagaagacggccaaccttgga
caggtgcagatgctggtgctcgacgaggccgaccggatgctcgacatgggcttcctgccc
gacctgcagcggatcctgaacctgctgccgaaggtgcgccagacgctgctgttctcggcg
acgttttcgcccgaaatcaagaagctggcctcgacctacctgatcaatccgcagaccatc
gaagtcgcgcgcagcaatgcgaccgcgaccaacgtcacgcagatcgtctacgacatcccc
gagggcgacaagcaggcggccgtggtcaagctgatccgcgatcgcgcgctcaagcaggtg
atcgtgttctgcaacagcaagctcggtgcgagccggctcgcgcgccagctcgaacgcgac
ggcgtgatcgccacggcgatccacggcgaccgctcgcagaacgagcggatgcaggcgctc
gacgcgttcaagcgcggcgaggtcgaggcgctggtggccaccgacgtggccgcgcgcggg
ctcgacatcgccgaactgccggccgtgatcaatttcgatctgccgttcagcgccgaggac
tacgtccaccggatcggccggaccggccgcgcgggcgcctcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgacatcgagaagctgatcaagcgcgaccta
ccgctgcagccgctggcgatcgacgcgccggtgcgtgcgcgccgcgagcacggcgagcgt
agtgaacgcggtgaacgtagcgagcgcggtgaacgtagcgagcgcggtgaacgcggtagc
cgtgacgagtcgcgcgcgccgcgccgcgcgcacggcggtgaacgcagccatcatcaccat
tcgcgtcgcgaagcgccgatcgacgagtttttcctcaagccctacgagccggcgccgagc
gcgcgtcagccggaagaggcgaccaagcccgcgcagccggagaagaagtcgaagcagccg
ctcgcggctttgcttggcggcttcgggatgccgcgccgctcgtcgtcgtaa
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