Candidatus Blochmanniella pennsylvanica: BPEN_113
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Entry
BPEN_113 CDS
T00272
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpn
Candidatus Blochmanniella pennsylvanica
Pathway
bpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPEN_113 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpn03019
]
BPEN_113 (deaD)
03009 Ribosome biogenesis [BR:
bpn03009
]
BPEN_113 (deaD)
Enzymes [BR:
bpn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BPEN_113 (deaD)
Messenger RNA biogenesis [BR:
bpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BPEN_113 (deaD)
Ribosome biogenesis [BR:
bpn03009
]
Prokaryotic type
rRNA helicases
BPEN_113 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
RSC4_Ig_like
Motif
Other DBs
NCBI-ProteinID:
AAZ40753
UniProt:
Q493T2
LinkDB
All DBs
Position
133041..134750
Genome browser
AA seq
569 aa
AA seq
DB search
MSKTVDSFIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAF
VLPLLHNVDINNSCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTLYGGQSYGIQLS
ALNKRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVK
RQTALFSATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALMRF
LETEDFDAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDIL
IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRH
IERKIKLKIPEVQYPTSETLFDCRLSRFTNKVEYQLSTENDDLDVYRSLLPQIKPRRDLT
TENLAAVLLKIAQGNRPLVFPPDPIIKNKSVSKIRINSNRQNCFRVENRVIKTRLQSKIS
DNMDAYHISVGRNDGVKIRHIIRVLSNNIANIRYHEIGNIKLFSFHAIIELDKGLSSNKI
LTQLSHARILNKPINMKFLGNMSSCNDVH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactgtagactcttttatagatttaggattaaatcgttatattgtcaatgtt
ttacatgatgttgggtatacaaaacctctacctattcaaattcaatgcattccatattta
ttagctggatatgatgtgttaggaatggcgcatacaggtagcggaaaaactgcggcattt
gtcttaccattattacataatgttgatattaacaattcttgttctcaaggtttaattata
acgcctactcgagagttggcgatacaaattgggagagtgtgttctaattttgcaaaatat
atgaaaaaaataaatgttgttactttatatggagggcaaagttatggcattcaattaagt
gctttaaataagagacctcatattatagtaagtactccaggtagactaatagatcattta
aaccgtggaactgctaatttatctcaattaaaaactttagtaatagatgaagctgatgaa
atgttgcgcatgggatttcttgaagatgtagagcgtatcattaaaaatattccagttaaa
cgtcaaacagcattattttctgctactttacctatgggtattcgtcgtataagttatcga
tttatgaacaatccaaaagaagtatttatccattctaatactagcatgtgtgctaatatt
agacaaagttattggttagtacattcaggaatcgctaaacatgaggctttaatgcgtttt
ttagaaacagaagattttgacgcagctattgtttttgttcgtactaaatatgcaacgttg
gagatttccgaaatattagagagatttggttataatagtgcagctttgaatggagatatg
aatcaaacagtacgacatcagacattagatcgattaaggcatggtaagttagatattctt
atagctactgatgttgctgcacgtggattagatgttcatcgtattagtttagtaataaat
tatgatataccaataaattctgatgcttatatacatcgtataggtagaactggtagagca
ggatgcatgggaaaatccttattatttgtagagcataaagaatatcgtttgttgcgtcat
attgaacgtaaaataaaactaaaaattccagaggttcagtatcctacctctgaaacttta
tttgattgtcgattatcgagatttacgaataaagtagaatatcaattaagtaccgagaat
gatgatttggatgtatatcgatctctattacctcaaataaaacctagaagagatttgaca
acggaaaatttagcagctgttttgctgaaaatagcgcaaggcaatcgtccattggtattc
cctccagatccgattattaaaaataaatcagtttctaaaatacgtataaatagtaatcgt
caaaattgttttcgtgttgaaaatagagttattaaaactaggttgcaatctaaaatttct
gataatatggatgcttatcacatatcagtagggcgtaatgatggagttaaaatacgtcat
attattagagtgctttcgaataatattgctaatattcgctatcacgaaataggtaatatt
aaattattttcctttcatgctattattgagttagacaaagggttatctagcaacaaaata
ttaacgcagttgtctcatgcacgtattttaaataaaccaataaatatgaaatttttaggt
aatatgtcctcatgtaatgatgtacattga
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