Brevundimonas pondensis: IFE19_05890
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Entry
IFE19_05890 CDS
T07639
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpon
Brevundimonas pondensis
Pathway
bpon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IFE19_05890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpon03021
]
IFE19_05890 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpon03400
]
IFE19_05890 (rpoC)
Enzymes [BR:
bpon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IFE19_05890 (rpoC)
Transcription machinery [BR:
bpon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IFE19_05890 (rpoC)
DNA repair and recombination proteins [BR:
bpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IFE19_05890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
YnfE
Motif
Other DBs
NCBI-ProteinID:
QTC88869
LinkDB
All DBs
Position
1175296..1179492
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEYGDDGFTA
EIGAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDNQPGEGKLFANMGEIDAALD
AQVVKLHTKIKARWTEMNAAGEEITKVIDTTPGRMKLGALLPLNPNIGYRLLEKNLTKKE
IGNLIDQVYRHCGQKATVIFADQMMQLGFREAAKAGISVGKDDIVIPAKKEELVNETRTQ
VEEYEQQYADGLITKGEKYNKVVDAWAKATDKIADEMMGEIAQPRVLIAGQEPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEEDCGSTRGITLRAVVEGGDVLVSLGQRVLGRYA
AEDIKEPGTDNVIFPADTYLQEEEVEAIDAAGVQSIKVRSALTCEADAGICGMCYGRDLA
RGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFYEATNAGKAKIVGPTV
VAAHGDLVALSRNVVVVVVVDGKDRETHKVPYGARIRVKEGADIAKGQRLAEWDPYTTPI
LTEVGGVVRFEDLVDGLSVREETDEATGIAQRVVSDWRASPRGSDLRPAMGVTTGDTYAK
LASGSDARYLLPVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRP
KDCAVIAEMDGRVEFGRDYKNKRRIKITPEVDADGNQAEAVEFLIPKGKHISVHDGDLIQ
KGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVE
VIDSGETTLIRGDTVEVAEAALENAKVEKRGGRLAVTQPVLLGITKASLQTRSFISAASF
QETTRVLTEASVHGKKDLLEGLKENVIVGRLIPAGTGAYLRSLQKLANERDAELTQARED
AIEPLPADLALELEQPEG
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcacgccgaccttcgaccag
atcaagatcgccctggcctcgccggagaagatccggtcgtggtcgttcggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgtatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgttgaagtcacgctggctcgcgtccgccgc
gagcgcatgggtcacatcgacctggccgccccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcatctcgctgatgctggacatggcgctgaaggacgtcgagcgcgtcctg
tatttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagcagaaccaactg
ctgacggaagacgagttctaccgctatcaggaagaatacggcgatgacggcttcacggcc
gagatcggcgccgaggccgtccgcaacctgctgatgggcatcgacctgaacgccgaggct
gaaaagcaccgcgcagagctggccgacaacccgtcggaaatgaaggccaagaaggcgtcc
aagcgcctgaagctgatcgaggccttcctggaatcgggcaacaagcccgagtggatgatc
ctgacgatcgtcccggtcatcccgcccgaactgcgcccgctggtgccgctggacggcggc
cgctttgcgacgtcggacctgaacgacctgtatcgccgggtcatcaaccgtaacaaccgc
ctgaagcgcctgatcgagcttcgcgcgccggacatcatcatccgtaacgaaaagcggatg
ttgcaggaatcggtcgacgccctgttcgacaacggccgtcgtggtcgcgtgatcacgggc
gccaacaagcgtccgctgaagtcgctggccgacatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctgggcaagcgcgttgactactcgggtcgttcggtcatcaccgtgggc
cccgagctgaagctgcatgagtgcggcctgccgaagaagatggcgctggagctgttcaag
cccttcatctacgcgcgtctggacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtcgagcgcgagcagccgcaggtctgggacatcctggaagaagtgatccgggaa
cacccggtcatgctgaaccgcgcgccgacgcttcaccgcctgggcatccaggcgttcgag
ccgaagctgatcgagggcaaggccatccgcctgcacccgctggtctgcaccgccttcaac
gccgacttcgacggcgaccagatggctgttcacgtcccgctgtcgctggaggcgcaactg
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatcgtcctgggcctgtactacctgtcgctggtcaaggat
aaccagccgggcgaaggcaagctgttcgccaacatgggtgaaatcgacgccgccctggac
gcccaggtcgtcaagctgcacaccaagatcaaggcccgctggaccgagatgaacgccgcc
ggcgaggagatcaccaaggtgatcgatacgacgccgggccggatgaagctgggcgctctg
ctgccgctgaacccgaacatcggctaccgtctgctcgagaagaacctgaccaagaaggaa
atcggtaacctgatcgatcaggtctatcgtcactgcggtcagaaggcgacggtcatcttc
gccgaccagatgatgcaactgggcttccgtgaagcggccaaggccggcatctcggtgggc
aaggacgacatcgtcattcccgccaagaaggaagaactggtcaacgaaacccgcacccag
gtcgaggagtacgagcaacagtacgctgacggcctgatcaccaagggtgagaagtacaac
aaggtcgtcgacgcctgggccaaggccacggacaagatcgctgacgagatgatgggcgaa
atcgcccagcctcgcgtcctgatcgcgggccaggagccggacatcaactccgtcttcatg
atggccaactccggcgcccgtggttcgcaggcccagatgaagcagctgggcggcatgcgc
ggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgagtacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgccaactcgggttacctgacccgtcgtctggtggacgtggcg
caggactccatcgtcaccgaggaagactgcggctcgacgcgcggcatcaccctgcgcgcc
gtggttgaaggcggtgacgtcctggtctcgctgggccaacgcgtcctgggtcgctacgcg
gccgaggacatcaaggagccgggcaccgacaacgtcatcttccccgccgacacctatctg
caggaagaagaagtcgaggccatcgacgcggccggcgtccagtcgatcaaggtccgttcg
gccctgacctgtgaagccgacgcgggcatctgcggcatgtgctatggtcgtgacctggcg
cgcggcaccaacgtcaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggc
gagccgggcacccagctgacgatgcgtaccttccacatcggcggtacggcccaggtggcg
gaaacctccttctatgaggcgaccaacgccggtaaggccaagatcgtgggcccgaccgtc
gtcgcggcgcacggcgacctggtggccctgagccgcaacgtggtcgtggttgtggtcgtg
gacggcaaggaccgcgaaacccacaaggtcccgtacggcgctcgcatccgcgtcaaggaa
ggcgccgacatcgccaagggccaacgtctggcggagtgggacccctacaccacgccgatc
ctgaccgaagtcggcggcgtggttcgcttcgaggacctggtcgacggcctgtcggtccgc
gaggaaaccgacgaagcgacgggcatcgcccagcgcgtggtttccgactggcgcgccagc
ccccgcggttcggacctgcgtccggccatgggcgtcacgaccggcgacacctacgccaag
ctggcctcgggctctgacgcccgctacctgctgcccgtgggcgccgttctgtccgtgtcc
aacggcgacgaggtcaagccgggcgagatcatcgcccgtgttccgaccgaaggcgccaag
acccgcgacatcaccggcggtctgccgcgcgttgctgaactgttcgaagcccgccgtccg
aaggactgcgccgtcatcgctgaaatggatggccgcgttgagttcggtcgcgactacaag
aacaagcgtcgcatcaagatcactccggaagtggacgccgatggcaaccaggccgaggcg
gtcgagttcctgatcccgaagggcaagcacatctccgtccacgacggcgatctgatccag
aagggcgactacatcatcgacggcaacccggatccgcacgacctgctgcgcatccagggc
gtcgaagcgctggccgagtatctggtgaacgaagtgcaggaggtctaccgactgcagggc
gtgccgatcaacgacaagcacatcgaagtcatcgtccgtcagatgctgcagaaggtcgag
gtcatcgactccggcgagaccaccctgatccgtggcgacacggtcgaggtggccgaggcg
gcgctcgagaacgccaaggtcgagaagcgcggcggccgtctggctgtcacgcagccggtc
ctgctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcgtccttc
caggaaaccacgcgcgtcctcaccgaggcttcggtccacggcaagaaggacctgctggaa
ggcctgaaggaaaacgtcatcgtcggccgtctgatcccggcgggcacgggcgcctatctg
cggtcgctgcagaagctggcgaacgagcgcgacgcggaactgactcaggcccgcgaagac
gccatcgagccgctgccggccgacctggccctggaactggagcagccggaaggttga
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