Brevundimonas pondensis: IFE19_06970
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Entry
IFE19_06970 CDS
T07639
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bpon
Brevundimonas pondensis
Brite
KEGG Orthology (KO) [BR:
bpon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpon03016
]
IFE19_06970 (rnd)
Enzymes [BR:
bpon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IFE19_06970 (rnd)
Transfer RNA biogenesis [BR:
bpon03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IFE19_06970 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Val_tRNA-synt_C
Motif
Other DBs
NCBI-ProteinID:
QTC89062
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All DBs
Position
1377230..1378381
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AA seq
383 aa
AA seq
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MTPITTNDALIEFCERLAKAPFITVDTEFMRETTYWPKLCLIQAASPTDAAIIDPMAEDL
NLEPFLALLRDESIIKVFHAARQDVEIFNRLGAMPKPMFDTQVAAMAAGFGDQVSYEQLV
RQMLRQELDKGSRFTDWARRPLSEAQLVYALGDVTHLAALYPKLRDRLQKEGRLDWVMSE
MGALTDPALYDTTPENAWKRLKPKKFSAKYLAAFVATAVWRERAAQERDQPRGRILKDEG
IDEIAVQAPTDPEAFNRLRSVPKGFGGSRLGLELAAELKRVLADPEAHAPKLERPAHSQP
APPSVVELLKVLLKAKSDNAGVATKLIANVADLEKIANDDNADVEAMKGWRRQLFGDDAL
KLKKGEIALVLNGSRVEVVEIEG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgacgccaatcaccaccaatgacgcgctaatcgagttctgtgaacgtctggccaaggcc
ccgttcatcacggtcgataccgaattcatgcgcgagacgacctactggcccaagctttgc
ctgatccaggccgcttcgccgacggacgccgccatcatcgatccgatggccgaggatctg
aacctggagcccttcctcgccctgctgcgcgacgaatcgatcatcaaggtcttccacgcc
gcccgccaggacgtcgaaatcttcaaccgcttgggcgccatgcccaagcccatgttcgac
acccaggtcgcggccatggccgccggcttcggcgatcaggtcagctatgagcagctggtg
cgccagatgctgcgtcaggaactggacaagggcagccgcttcaccgactgggcgcgccgt
ccgctgtcggaggcgcagctggtctatgccctgggcgacgtgacccacctggccgcgctc
tatcccaagctgcgcgaccggcttcagaaggaaggtcgtctggactgggtcatgtccgaa
atgggcgccctgaccgatccggccctctatgacaccacgcccgagaatgcgtggaagcgc
ctgaagcccaagaagttcagcgccaaatacctggccgcctttgtcgccaccgccgtctgg
cgcgagcgcgcggcccaggaacgcgatcagccgcgcggccgcatcctcaaggacgagggc
atcgacgagatcgcggttcaggccccgaccgaccctgaggccttcaaccgcctgcgttcg
gtgcccaagggctttggcggttcgcgcctgggtctggaactggccgctgaactgaagcgc
gtcctggctgacccggaagcccatgcgcccaagctggagcgcccggcgcacagccagcca
gccccgccgtcggtggtggaactgctgaaggtgctgctgaaggccaagagcgacaacgcc
ggcgtggccaccaagctgatcgccaacgtcgccgatctggaaaagatcgccaatgacgac
aacgccgacgtcgaggccatgaagggctggcgccgccagctgttcggcgacgacgccctg
aagctcaagaagggcgagatcgccctggttctgaacggctcgcgcgtcgaagtcgtcgaa
atcgaaggctag
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