KEGG   Brevundimonas pondensis: IFE19_08100
Entry
IFE19_08100       CDS       T07639                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bpon  Brevundimonas pondensis
Pathway
bpon03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    IFE19_08100 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpon03400]
    IFE19_08100 (mfd)
Enzymes [BR:bpon01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IFE19_08100 (mfd)
DNA repair and recombination proteins [BR:bpon03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      IFE19_08100 (mfd)
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID MFD_D3 UB2H SecA_DEAD AAA_25
Other DBs
NCBI-ProteinID: QTC89270
LinkDB
Position
1614589..1618038
AA seq 1149 aa
MGEAMARRDVELGGAPEGLDALVVAERLKAQGGVGLLVARDYQRSGNFTQTLSFFAKDIE
VLEYPSWDCLPYDRLSPTASVAAQRMATLTRLAQRDPADDRPLLVVATIAAATQRTPPRQ
AVTGAGFEARVGRDLDTAALERYVLANGYVRASTVSERGEYAIRGGVIDVFPPGFDEPVR
LDLFGSELESIRAFDPETQRSTKQLKQVALLPVSEVLLDAESISRFRSGYLNLFGAPGDE
PMYAAVSEGARRQGLEHWLPLFYDRLDTLFDFLPDSAPVFLDSQVEQARAERWNLTTDAY
EARKEAAKGKGGAAYRAAAPQSLYLDEGDWNSALAGRAVRRLSPLSGGTGEDAGGRLGRS
FAAERSQDSVNLFAAVAQHAEDLKGQGKRVLFASWTEGSAERLAAMLGDHGLTHVLPVRD
WDDVLAAPKDIYLRAVLPVEHGFVTDEVAVISETDILGDRLARPKRKRRASNFLAEASAL
TAGDLVVHLDHGIGRYEGLKTLEIQEAPHDCLELLYAGDSKLYLPVENIDLLTRYGTDAD
GVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPSGLFDEFCARFP
YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPT
TLLARQHFKTFSERFAGWPITVRHLSRMVTAKDANETRVGLKDGTFEIVVGTHAVLAEQV
GFKDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT
PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPEIEKFLREQVPEVKF
VVGHGQMSPTQLEEVMSAFYDGQYDVLVSTTIVESGIDIPTANTLIVHRADMFGLAQLHQ
IRGRIGRSKARAFAYLTTDPKRPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL
LGDEQSGHIREVGVELYQQMLEDAVAELREQGEEVADRGWSPSINVGAAVLIPETYVPDL
NVRLSLYRRLSDAEKMEDREAMAAELIDRFGPLPDEAQQLLRIVGIKANCRTASIEKIDI
GPKGAVLTLRNNSFPNPMGLVGLIQKNQAFWKIRPDQKIVVKGEWPTPDDRLKVAERITA
DLARVAGAA
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgggcgaggcgatggcgcggcgtgacgttgaactgggcggcgcgcccgaggggctggac
gcgttggtcgtcgccgaacgactgaaggcgcagggcggggtcggcctgttggtggcgcgt
gattatcagcgctcgggcaattttacgcaaacgctgagcttcttcgccaaggatattgaa
gtccttgaatatccgtcctgggactgcctgccctatgaccgactgagcccgaccgcttcg
gtcgcagcgcagcggatggcgaccctgacccggctggcgcaacgcgatccggcggacgac
aggcccctgctggtggtcgccacgatcgccgcagcgacccagcgcacgccgccgcgtcag
gccgtcactggggccgggttcgaggccagggtcggtcgcgatctggatacggcggcgctg
gaacgttatgtcttggccaacggctatgtgcgggcctcgaccgtgtcggagcggggtgaa
tacgccattcgcggcggggtgatcgacgtcttcccgccgggctttgacgagcccgtgcgt
ctggacctgttcggcagcgagctggaatccatccgcgcctttgatcccgagacgcaacgc
tcgaccaagcaactgaagcaggtcgcgcttctgccggtgtcggaggttctgctggacgcc
gagagcatctcgcgcttccgcagcggctatctgaacctgttcggcgcgccgggcgacgag
cccatgtacgccgccgtcagcgagggcgcgcgccgtcaggggctggagcactggctgccg
ctcttctacgaccggcttgacactctgttcgacttcctgccggacagcgcgccggtcttc
ctcgacagtcaggtggagcaggcccgcgccgagcgctggaacctgacgaccgacgcctat
gaggcgcgcaaggaggcggctaagggcaagggcggcgcggcctatcgcgccgcggcgccc
cagagcctctatctggacgaaggcgactggaacagcgccttggccggccgcgccgtgcgc
cgcctgtccccgctgtcgggcggcacgggcgaggacgccggcggccgtctgggccgcagc
ttcgccgccgagcgctcgcaggacagcgtcaacctgttcgccgccgtggcccagcacgcc
gaggacttgaaggggcagggcaagcgggtgctgttcgcctcctggaccgaaggctcggcc
gagcgtctggcggccatgctgggcgaccacggcctgacccacgtcctgccggtgcgcgac
tgggacgatgttctggcggcgccgaaggacatctatctgcgcgccgtcctgccggtcgaa
catggcttcgtcaccgacgaggtcgcagtcatttccgagaccgacatcctgggcgaccgc
ctggcgcggcccaagcgcaagcggcgggcgtcgaacttcctggctgaggcctcggcgctg
acggcgggcgatctggtcgtccatctggatcacggcatcgggcgctatgagggcctgaag
acgctggagatccaggaggcgccgcacgactgcctggaactgctctacgccggtgacagc
aaactctacttgccggttgaaaacattgaccttctgacccgctacgggacggacgccgac
ggggttcagctggatcgtctgggcggagcaggctggcaggcgcgcaaggcgaaagcgaaa
gagcgcctgcgcgccatggccgagggcctcatcgccctggccgccaagcgggcgttgcgc
gtctccgacgccatcacgccgccgtccggcctgttcgacgagttctgcgcccgcttcccc
tacgaggagacggacgaccagctgaacgccatcggcgacgtgctggaagacctgggcaag
ggcacgccgatggatcgtctgatctgcggcgacgtcggtttcggcaagaccgaggtggcc
ctgcgcgcggccttcgtcgtggccatgacaggccagcaggtggcgatcgtctgtccgacg
accctcctggcgcgccagcatttcaagaccttcagcgagcgcttcgccggctggccgatc
accgtgcggcacctgtcgcgcatggtcacggccaaggacgccaacgagacccgcgtgggc
ctgaaggacgggacgttcgagatcgtcgtcggcacccacgccgtgctggccgaacaggtc
ggcttcaaggaccttggcctggtgatcgtcgacgaggagcagcacttcggcgtcaagcac
aaggagaagctgaagtccctgcgggccgatgttcacctgctgaccctgacggccacgccg
atcccgcgcaccctgcagatggccctgtcgggcattcgcgagatgtcgatcatcgccacg
ccgccggtcgatcgtctggcggtgcggacctatgtcacgccctgggacccggtgctggtg
cgcgaggccctgctgcgcgagaagtatcgtggcgggcaggcctattatgtcgcgccgcgc
ttgaaggacctgccggaaatcgagaagttcctgcgcgagcaggtgcccgaggtgaagttc
gtcgtcggccacggccagatgagcccgacccaactggaggaggtgatgagcgccttctac
gacgggcagtacgacgtcctggtctcgaccacgattgtcgagagcggcatcgatattccg
acggccaacaccctgatcgtccaccgcgccgatatgttcgggctggcccaacttcaccag
atccggggccgcatcggccggtccaaggcacgggccttcgcctaccttacgaccgatccc
aagcggccgctgagcctgtcggccgagcggcggctgcaggtactgcagtcgctggacaac
ctgggggccggtttccagttggccagccacgacctggatcagcgcggcggcggcaacctg
ctgggcgacgagcagtcgggccatatccgcgaggttggggtcgaactgtatcagcagatg
ctggaagacgccgtcgccgaactgcgcgagcagggcgaggaagtggccgaccgcggctgg
tcgccgtcgatcaatgtcggcgcggcggtcctaattccagagacttacgtaccagacctg
aatgttcgcctcagtctctatcgccgtctgtcggacgccgagaagatggaggaccgcgag
gccatggccgccgaactgatcgaccgcttcggcccgcttccggacgaggcgcaacagctt
ctgcggatcgtcggcatcaaggccaattgccgcacggcctcgatcgagaaaatcgacatc
gggcccaagggcgcggtgctgaccctgcgcaacaatagcttccccaacccgatggggctg
gtggggctgatccagaagaaccaggccttctggaagatccgccccgatcagaagatcgtg
gtgaagggcgagtggcccacgcctgacgaccgcctgaaggtcgccgagcggatcaccgcc
gatctggcgcgggtggcgggggcggcctaa

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