Brevundimonas pondensis: IFE19_08100
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Entry
IFE19_08100 CDS
T07639
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpon
Brevundimonas pondensis
Pathway
bpon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IFE19_08100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpon03400
]
IFE19_08100 (mfd)
Enzymes [BR:
bpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IFE19_08100 (mfd)
DNA repair and recombination proteins [BR:
bpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IFE19_08100 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QTC89270
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All DBs
Position
1614589..1618038
Genome browser
AA seq
1149 aa
AA seq
DB search
MGEAMARRDVELGGAPEGLDALVVAERLKAQGGVGLLVARDYQRSGNFTQTLSFFAKDIE
VLEYPSWDCLPYDRLSPTASVAAQRMATLTRLAQRDPADDRPLLVVATIAAATQRTPPRQ
AVTGAGFEARVGRDLDTAALERYVLANGYVRASTVSERGEYAIRGGVIDVFPPGFDEPVR
LDLFGSELESIRAFDPETQRSTKQLKQVALLPVSEVLLDAESISRFRSGYLNLFGAPGDE
PMYAAVSEGARRQGLEHWLPLFYDRLDTLFDFLPDSAPVFLDSQVEQARAERWNLTTDAY
EARKEAAKGKGGAAYRAAAPQSLYLDEGDWNSALAGRAVRRLSPLSGGTGEDAGGRLGRS
FAAERSQDSVNLFAAVAQHAEDLKGQGKRVLFASWTEGSAERLAAMLGDHGLTHVLPVRD
WDDVLAAPKDIYLRAVLPVEHGFVTDEVAVISETDILGDRLARPKRKRRASNFLAEASAL
TAGDLVVHLDHGIGRYEGLKTLEIQEAPHDCLELLYAGDSKLYLPVENIDLLTRYGTDAD
GVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPSGLFDEFCARFP
YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPT
TLLARQHFKTFSERFAGWPITVRHLSRMVTAKDANETRVGLKDGTFEIVVGTHAVLAEQV
GFKDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT
PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPEIEKFLREQVPEVKF
VVGHGQMSPTQLEEVMSAFYDGQYDVLVSTTIVESGIDIPTANTLIVHRADMFGLAQLHQ
IRGRIGRSKARAFAYLTTDPKRPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL
LGDEQSGHIREVGVELYQQMLEDAVAELREQGEEVADRGWSPSINVGAAVLIPETYVPDL
NVRLSLYRRLSDAEKMEDREAMAAELIDRFGPLPDEAQQLLRIVGIKANCRTASIEKIDI
GPKGAVLTLRNNSFPNPMGLVGLIQKNQAFWKIRPDQKIVVKGEWPTPDDRLKVAERITA
DLARVAGAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggcgatggcgcggcgtgacgttgaactgggcggcgcgcccgaggggctggac
gcgttggtcgtcgccgaacgactgaaggcgcagggcggggtcggcctgttggtggcgcgt
gattatcagcgctcgggcaattttacgcaaacgctgagcttcttcgccaaggatattgaa
gtccttgaatatccgtcctgggactgcctgccctatgaccgactgagcccgaccgcttcg
gtcgcagcgcagcggatggcgaccctgacccggctggcgcaacgcgatccggcggacgac
aggcccctgctggtggtcgccacgatcgccgcagcgacccagcgcacgccgccgcgtcag
gccgtcactggggccgggttcgaggccagggtcggtcgcgatctggatacggcggcgctg
gaacgttatgtcttggccaacggctatgtgcgggcctcgaccgtgtcggagcggggtgaa
tacgccattcgcggcggggtgatcgacgtcttcccgccgggctttgacgagcccgtgcgt
ctggacctgttcggcagcgagctggaatccatccgcgcctttgatcccgagacgcaacgc
tcgaccaagcaactgaagcaggtcgcgcttctgccggtgtcggaggttctgctggacgcc
gagagcatctcgcgcttccgcagcggctatctgaacctgttcggcgcgccgggcgacgag
cccatgtacgccgccgtcagcgagggcgcgcgccgtcaggggctggagcactggctgccg
ctcttctacgaccggcttgacactctgttcgacttcctgccggacagcgcgccggtcttc
ctcgacagtcaggtggagcaggcccgcgccgagcgctggaacctgacgaccgacgcctat
gaggcgcgcaaggaggcggctaagggcaagggcggcgcggcctatcgcgccgcggcgccc
cagagcctctatctggacgaaggcgactggaacagcgccttggccggccgcgccgtgcgc
cgcctgtccccgctgtcgggcggcacgggcgaggacgccggcggccgtctgggccgcagc
ttcgccgccgagcgctcgcaggacagcgtcaacctgttcgccgccgtggcccagcacgcc
gaggacttgaaggggcagggcaagcgggtgctgttcgcctcctggaccgaaggctcggcc
gagcgtctggcggccatgctgggcgaccacggcctgacccacgtcctgccggtgcgcgac
tgggacgatgttctggcggcgccgaaggacatctatctgcgcgccgtcctgccggtcgaa
catggcttcgtcaccgacgaggtcgcagtcatttccgagaccgacatcctgggcgaccgc
ctggcgcggcccaagcgcaagcggcgggcgtcgaacttcctggctgaggcctcggcgctg
acggcgggcgatctggtcgtccatctggatcacggcatcgggcgctatgagggcctgaag
acgctggagatccaggaggcgccgcacgactgcctggaactgctctacgccggtgacagc
aaactctacttgccggttgaaaacattgaccttctgacccgctacgggacggacgccgac
ggggttcagctggatcgtctgggcggagcaggctggcaggcgcgcaaggcgaaagcgaaa
gagcgcctgcgcgccatggccgagggcctcatcgccctggccgccaagcgggcgttgcgc
gtctccgacgccatcacgccgccgtccggcctgttcgacgagttctgcgcccgcttcccc
tacgaggagacggacgaccagctgaacgccatcggcgacgtgctggaagacctgggcaag
ggcacgccgatggatcgtctgatctgcggcgacgtcggtttcggcaagaccgaggtggcc
ctgcgcgcggccttcgtcgtggccatgacaggccagcaggtggcgatcgtctgtccgacg
accctcctggcgcgccagcatttcaagaccttcagcgagcgcttcgccggctggccgatc
accgtgcggcacctgtcgcgcatggtcacggccaaggacgccaacgagacccgcgtgggc
ctgaaggacgggacgttcgagatcgtcgtcggcacccacgccgtgctggccgaacaggtc
ggcttcaaggaccttggcctggtgatcgtcgacgaggagcagcacttcggcgtcaagcac
aaggagaagctgaagtccctgcgggccgatgttcacctgctgaccctgacggccacgccg
atcccgcgcaccctgcagatggccctgtcgggcattcgcgagatgtcgatcatcgccacg
ccgccggtcgatcgtctggcggtgcggacctatgtcacgccctgggacccggtgctggtg
cgcgaggccctgctgcgcgagaagtatcgtggcgggcaggcctattatgtcgcgccgcgc
ttgaaggacctgccggaaatcgagaagttcctgcgcgagcaggtgcccgaggtgaagttc
gtcgtcggccacggccagatgagcccgacccaactggaggaggtgatgagcgccttctac
gacgggcagtacgacgtcctggtctcgaccacgattgtcgagagcggcatcgatattccg
acggccaacaccctgatcgtccaccgcgccgatatgttcgggctggcccaacttcaccag
atccggggccgcatcggccggtccaaggcacgggccttcgcctaccttacgaccgatccc
aagcggccgctgagcctgtcggccgagcggcggctgcaggtactgcagtcgctggacaac
ctgggggccggtttccagttggccagccacgacctggatcagcgcggcggcggcaacctg
ctgggcgacgagcagtcgggccatatccgcgaggttggggtcgaactgtatcagcagatg
ctggaagacgccgtcgccgaactgcgcgagcagggcgaggaagtggccgaccgcggctgg
tcgccgtcgatcaatgtcggcgcggcggtcctaattccagagacttacgtaccagacctg
aatgttcgcctcagtctctatcgccgtctgtcggacgccgagaagatggaggaccgcgag
gccatggccgccgaactgatcgaccgcttcggcccgcttccggacgaggcgcaacagctt
ctgcggatcgtcggcatcaaggccaattgccgcacggcctcgatcgagaaaatcgacatc
gggcccaagggcgcggtgctgaccctgcgcaacaatagcttccccaacccgatggggctg
gtggggctgatccagaagaaccaggccttctggaagatccgccccgatcagaagatcgtg
gtgaagggcgagtggcccacgcctgacgaccgcctgaaggtcgccgagcggatcaccgcc
gatctggcgcgggtggcgggggcggcctaa
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