Brevundimonas pondensis: IFE19_11425
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Entry
IFE19_11425 CDS
T07639
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bpon
Brevundimonas pondensis
Brite
KEGG Orthology (KO) [BR:
bpon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpon03016
]
IFE19_11425
Enzymes [BR:
bpon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IFE19_11425
Transfer RNA biogenesis [BR:
bpon03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IFE19_11425
Prokaryotic type
tRNA splicing ligases
IFE19_11425
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
RTC_insert
Motif
Other DBs
NCBI-ProteinID:
QTC86749
UniProt:
A0ABX7SGP7
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All DBs
Position
2291680..2292897
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AA seq
405 aa
AA seq
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MRGYDVIESPGVPIKAWTRGVPIEDAALKQLKNVASLPFIHKHVAVMPDVHWGMGATVGS
VIPTLKAIIPAAVGVDIGCGMMAVRTSIRAEHLPDDLSGIRSAIEAAVPHGRTDNGGRND
KGAWAVEPPASAATRWAELKPGYDAVVDRHPKAGHPRGFGHLGTLGTGNHFIELCLDEAG
DVWVMLHSGSRGVGNRFGTYFIERAKYEARRWHLNLPDQDLAYFPEGTEGFIDYVRAVSW
AQKYARANREVMMEQVLGVLKAIWPDLTTTQEAVNCHHNYVSKEKHFGQDVYLTRKGAVS
AKDGELGIIPGSMGAKSFIVRGKGNADSFCTCSHGAGRAMSRTEAKRRFTVEDHVRATQG
VECRKDAEVIDETPMAYKDIDAVIAAQADLIEVVHTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggctatgacgtaatcgaaagcccgggcgtgccgatcaaggcctggacccggggc
gtgcccatcgaggatgcggcgctgaagcagttgaagaacgtggcctcgttgcccttcatc
cataagcacgtcgcggtcatgcccgacgtgcactggggcatgggcgcgacggtgggctcg
gtgatcccgacgctgaaggccatcatccccgccgccgtgggcgtggacatcggctgcggt
atgatggcggtgcggacctcgatccgcgcagagcacctgccggacgacctgtcgggcatc
cgctccgccatcgaggccgccgttccgcacggccgcaccgacaacggcggacgcaatgac
aagggcgcctgggcggttgaaccgccggcctcggcggcgactcgttgggccgaactcaag
cccggctacgacgccgtggtggacaggcaccccaaggcgggccacccgcgcggcttcggc
cacctgggcacgctcggcaccggcaaccacttcatcgagctgtgcctcgacgaggcgggc
gacgtctgggtcatgctgcactcgggttcgcgcggggtcggcaaccgcttcgggacctac
ttcatcgagcgggccaagtacgaagcccgtcgctggcatctgaacctgccggaccaggac
ctggcctacttcccggaggggacggagggcttcatcgactatgtccgggcggtgtcgtgg
gcgcagaagtacgcgcgcgccaaccgtgaggtgatgatggagcaggtgctgggcgttctg
aaggccatctggcccgatctgacgacgacgcaggaggcggtgaactgccaccacaactac
gtctcgaaggagaagcacttcggccaggacgtctacctgacccgcaagggcgcggtgtcg
gccaaggacggcgagctgggcattatccccggatcgatgggggcgaaatccttcatcgtg
cgcggcaagggcaatgcggacagcttctgcacctgctcgcacggcgccgggcgagccatg
agccggaccgaggccaagcgccgcttcacggtagaagaccacgtccgcgccacccaaggc
gtcgagtgccgcaaggacgccgaggtgatcgatgaaacgccgatggcctacaaggacatc
gacgccgtcatcgccgcccaggccgacctgatcgaggtcgtgcacaccctgcgtcaggtg
gtgtgcgtcaagggatga
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