Bergeyella porcorum: BPO_0008
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Entry
BPO_0008 CDS
T09705
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpor
Bergeyella porcorum
Pathway
bpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPO_0008 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpor03019
]
BPO_0008 (recQ)
03400 DNA repair and recombination proteins [BR:
bpor03400
]
BPO_0008 (recQ)
Enzymes [BR:
bpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPO_0008 (recQ)
Messenger RNA biogenesis [BR:
bpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BPO_0008 (recQ)
DNA repair and recombination proteins [BR:
bpor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BPO_0008 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
WOC50655
UniProt:
A0AAU0EYK1
LinkDB
All DBs
Position
8240..10444
Genome browser
AA seq
734 aa
AA seq
DB search
MDTKNTDLSKELKKYFGFSTFKGQQEQIITTLLSGKDVFVLMPTGGGKSLCYQLPALMLE
GTAIVVSPLIALMKNQVDAVNGLSSDEGVAHVLNSSLNKTQTNQVFSDIKSGKTKLLYVA
PESLIKEEYLEFLREVKISFVAIDEAHCISEWGHDFRPEYRNLKLIIDKIAEVPVIALTA
TATPKVQDDIQKTLGMSNATVFKESFNRPNLYYEVRPKVNVDKEIVKFIHKNKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVVVATIAFGMGIDK
PDVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGEQFDPVNGAGAKMCDNSTNPPVLKDATKDLVQV
LEMVKKLDQKFRTKDLINVLMGKESSVTKSYRLDTHKLFGIGKHETDNYWKTIIRQATVQ
NFLQKDIETYGVLKISEKGQKMLDGEIKNAFMIAEDRHFDLEQIKSTSDKVEIQASSGLD
ENLFNQLKELRKKVAKKHGIPPYTVFMDPSLEDMTTQYPITVEEIAKIYGVGEGKAKKYG
KEFAEYIAKYVEENDIERTQDMVLKQVANKSSHKVFIIQNTDKKIDLEDIAKAKNLTMDE
LLKEMESIVYQGTKLNIDYYIDANIDEDIVEEFMDFMKESESDSMKVITAEFGDDLSDEE
LRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggatactaaaaacaccgatttatcgaaggagttaaagaaatacttcgggttttcaaca
ttcaaagggcagcaggagcaaatcattacgacgctgctgagtgggaaagatgtttttgta
ctgatgccaacagggggcggtaagtcgctctgttatcagcttccggctttaatgctagag
gggactgccatagtggtttctcctctcattgctctgatgaaaaatcaagtagatgctgtg
aatgggctttcttctgacgaaggtgttgcccacgttctcaattcttcccttaataaaaca
cagaccaatcaggtatttagtgatattaaaagtggaaagaccaagttgctttatgtcgct
ccagaatccctgataaaagaggagtatttggaatttttacgagaggtgaaaatctctttc
gtagcgatagatgaagcccattgtatctcagaatgggggcacgatttccgcccagagtac
agaaatctgaaactcatcatagataaaatagcagaggtaccagtaatagcccttacagca
acggcaacgcccaaggtgcaagatgatatccaaaaaaccttgggtatgagcaatgctacg
gtgttcaaagaaagttttaaccgaccaaatctctattatgaagttcgccctaaagtgaat
gtggataaagaaatcgtgaagtttattcataaaaataaagggaaatctgggattgtctat
tgtcttagcagaagaaaagtggaagagtttgcacagctccttcaggtgaatggcatcaat
gctttaccatatcacgcgggattagaccaaaaaacaagagtagccaatcaggataagttc
ttgatggaagaatgtgatgtagtggtggcaaccatagcctttgggatggggattgataag
ccagatgttcgttttgtaatccattatgatattccaaaatctttggaaagctactatcag
gagacgggtagagctggtagagatggaggtgaaggccattgcttggcgttttatgaccct
aaggatattgaaaaactggaaaaattcttggcacagaaacctgtttccgaaagagaaata
gggcttcaattgctgaacgaagtggtgggctatgccgaaacttctatgagcagaagacaa
tatattctttattatttcggtgaacagtttgaccctgtgaatggtgcaggggctaaaatg
tgtgataattctaccaatccgccagttttaaaagatgctaccaaagatctggtgcaggtg
ttggagatggtgaagaaattggaccaaaaattccgaaccaaagatttaatcaatgtcttg
atggggaaagaaagttctgttaccaaatcgtatcgtctagacacgcataaattatttgga
atcggtaaacacgaaacagataattattggaaaaccattatccgacaagcaacggtgcaa
aatttcttgcaaaaagatattgaaacctatggtgttttaaagatttctgaaaaaggacaa
aaaatgctagatggcgagattaaaaacgcctttatgatagcagaagaccgccattttgat
ttagaacaaatcaaatccacatcagataaagtagagatacaggcaagcagtgggctagac
gaaaacctatttaaccaactgaaagagttgcgaaaaaaagtagcgaaaaaacacggtatc
ccaccttatacggtgtttatggacccgagtttggaggatatgaccacgcaatatcccatc
acggtagaagagattgctaaaatctatggtgtaggcgagggaaaagctaaaaaatatgga
aaagaatttgcggaatatattgcaaaatatgtagaggaaaatgatatagaacgaacccaa
gatatggtgctgaagcaagtggctaataagtctagtcataaggtatttatcattcagaat
acagataaaaagatagatttagaagatattgcaaaggcgaaaaaccttacgatggatgaa
ctgcttaaagagatggaaagcattgtatatcaagggactaagctgaatatagattattac
atagatgctaatatagatgaagatattgtagaagagtttatggattttatgaaagaaagt
gaaagcgatagtatgaaggtcatcacggcagagtttggagatgatttgagtgatgaagaa
ctgagaatgcttcgcataaaattcattagcgatgttgctaattaa
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