Bergeyella porcorum: BPO_0619
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Entry
BPO_0619 CDS
T09705
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpor
Bergeyella porcorum
Pathway
bpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPO_0619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpor03019
]
BPO_0619
03009 Ribosome biogenesis [BR:
bpor03009
]
BPO_0619
Enzymes [BR:
bpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BPO_0619
Messenger RNA biogenesis [BR:
bpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BPO_0619
Ribosome biogenesis [BR:
bpor03009
]
Prokaryotic type
rRNA helicases
BPO_0619
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_helical
Motif
Other DBs
NCBI-ProteinID:
WOC51266
UniProt:
A0AAU0F122
LinkDB
All DBs
Position
complement(662015..663673)
Genome browser
AA seq
552 aa
AA seq
DB search
MNLFTETNLSPEILKAVGELGYVSPTEIQKQTIPFISSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIKNYTKYLPNIKTTAVYGGSSITEQIRSLK
GKPQIIVGTPGRVIDLINRKALDFSEISWLVLDEADEMLSMGFKDDLETIISETPETKQT
LLFSATMNKEVERISRNYLTNPHRISVGSINEVKKNISHEFYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKQIKSV
TKIEIQEKQIPTGEEIIKAQVEGVFERLFTEHEEFFTFDDALIPDLSSFTKEELVHQLLQ
LQLRDLSLYYKDKRDLKNEKLSDESDASSSRRERRRGDRDKRDRGGKPKKRNANMTRFFF
NLGKRDQLKKVDMLDIINKATKKSKKRPDIGDIEILDKFSFFEVEKEFKQEILNNLGSMK
FKGKEMRAEVAN
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaacctaagtcctgaaatcttgaaggcagttggcgaattg
ggctatgtaagccctacagaaatccaaaaacagactattcctttcatctcatcagatatt
cgcgatctcatcgcacttgcgcagacaggaacaggcaaaacagcagcattttcgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaattattggtgctgtgccctaca
agagaactttgtttgcagattaccaaagacattaagaactataccaaataccttccgaac
attaaaactactgcagtgtatgggggaagtagtattacggaacaaatccgctccctgaag
ggaaaaccacaaatcattgtgggaactccagggcgtgtgatagaccttatcaatagaaaa
gcgttagacttttcggaaatctcttggttggttttagacgaagccgatgagatgctttct
atgggcttcaaagatgatttggaaaccatcatcagcgaaactccagaaaccaaacaaacc
cttctgttctctgcaacgatgaataaagaggtggagagaatttctagaaactatcttacc
aatccgcaccgtatatcggtaggctctatcaatgaggtgaagaaaaatatttcacacgag
ttttatgtggtaggctatagacagaagaaagaagcattgaaacgattaatcgacgccaat
cctaaccaatattctatcatcttctgtagaaccagaatggaaacgcaagaggtggcagac
ttcctaatgcagaatggctacgctgccgatgctcttcacggagatttatctcaggctcag
agagatacggtaatgaaaaaattccgactgaaaaatatcgatatcctagtagcaactgat
gtggcagcaagaggtttggatgttaattctcttacccacgttatccattattctcttcct
gacgaccccgaagtgtttgtccatagaagtggaagaacagggcgtgcagggaaagacggt
atctctatggcattgataaaaccagaggaaacacgtaaactgaaacaaatcaaatcggta
acgaaaatagaaatccaagaaaagcaaatccctacaggtgaggagattatcaaagctcaa
gtggaaggcgtttttgaaagattgtttaccgagcacgaagagtttttcacctttgatgat
gctctgataccagacttatcctctttcaccaaagaagaattggtacatcagttattacaa
ttacagctaagagacttatcgctctactacaaggacaaacgcgatttgaaaaatgaaaaa
ctgtctgacgaaagcgatgcttcatctagtagaagagaaagaagacgaggcgatagagat
aaacgcgaccgcggtggcaaaccgaaaaaaagaaatgctaatatgacccgttttttcttc
aatcttgggaaaagagatcagctgaagaaagtggatatgctagacatcatcaacaaggcg
actaagaaatctaaaaaacgaccagacataggtgatattgagattttggataaattttct
ttcttcgaagtagaaaaagaattcaaacaagagattctgaataaccttggttcaatgaaa
tttaaaggaaaggaaatgcgtgccgaagttgccaactaa
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