Bergeyella porcorum: BPO_1416
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Entry
BPO_1416 CDS
T09705
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpor
Bergeyella porcorum
Pathway
bpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPO_1416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpor03019
]
BPO_1416
03016 Transfer RNA biogenesis [BR:
bpor03016
]
BPO_1416
Enzymes [BR:
bpor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BPO_1416
Messenger RNA biogenesis [BR:
bpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BPO_1416
Transfer RNA biogenesis [BR:
bpor03016
]
Prokaryotic type
tRNA degradation factors
BPO_1416
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
WOC52063
UniProt:
A0AAU0F2N5
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All DBs
Position
complement(1338676..1339809)
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AA seq
377 aa
AA seq
DB search
MAFVPLRPNEDKYTFSAVFEMNDKAEIINQWFGRTVTHSDRRFTYEEAQERIETGEGDLA
EEILVLDRLAKIMREERIHNGAIIFDRMEVRFNLDENNEPIGVYMKVGKDSNHLIEEFML
LANRKVSEYISLNLKNERTNNTFIYRIHEDPDPAKLEALKEFVSTFGYKMNIANTKQTTQ
SLNKLLKDVKGKGEENMIETLAMRSMSKAVYSTEPIGHYGLGFEYYTHFTSPIRRYPDVI
AHRLLQHYLDGANRPTKWKWKNRAKHSSARERLASDAERDSIKFMQVKFMEKHLGEVFEG
VISGVAEFGFWVQIPENGAEGLIKLRDLTDDSYLYDAKTHAVYGMRTGKQYQLGDVVKIK
VTKANLIQKQLDFKIVE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgttcctttgcgtcctaatgaggataaatacactttttcagcagtttttgag
atgaatgataaagcggaaattatcaatcaatggtttggaagaacggtaacacattccgac
agaagattcacctacgaagaagcccaagagcgtatagaaacaggtgaaggcgatttggcg
gaagaaatattagtcttagaccgattggcaaaaattatgagggaggaaagaatccataat
ggggcaattattttcgatagaatggaagtgcgttttaacctcgatgaaaacaatgaaccc
attggcgtttatatgaaggtagggaaggatagcaaccatttgatagaagaatttatgctc
cttgccaatagaaaagtatccgaatatatctctctaaatctgaaaaatgaacgcaccaat
aatacctttatttacagaattcacgaagacccagatccagcaaaattagaagctttaaag
gagtttgtaagcactttcggatataaaatgaatattgccaatacgaagcaaaccacacaa
agtttgaataaacttttaaaagatgtaaaaggaaaaggtgaggaaaatatgatagaaact
ttggcaatgcgttctatgagtaaggcagtctattccacagagcctatagggcattatgga
ttaggttttgagtattatacgcactttacatcgcctatccgaaggtatcccgatgtgata
gctcatcgtctattgcagcattatttagatggtgcaaatcgcccaacaaaatggaagtgg
aagaacagggcgaagcattcatctgcaagggaacgcttagcgagcgatgctgagagggac
tctatcaagtttatgcaagtaaaatttatggaaaaacaccttggagaagtttttgaaggc
gttatttctggtgtggcagagtttggattttgggtgcaaatccccgaaaatggagcagaa
ggacttatcaaacttcgagatttaaccgatgattcttatctctacgatgctaaaacccac
gcggtatatggtatgagaacgggcaaacaataccaactgggcgatgttgtaaaaataaaa
gttactaaggctaatttgattcaaaaacaattggatttcaagattgtggaatag
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