Brucella pinnipedialis B2/94: BPI_II631
Help
Entry
BPI_II631 CDS
T01589
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpp
Brucella pinnipedialis B2/94
Pathway
bpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BPI_II631 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpp03400
]
BPI_II631 (mfd)
Enzymes [BR:
bpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPI_II631 (mfd)
DNA repair and recombination proteins [BR:
bpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BPI_II631 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
AEK56059
LinkDB
All DBs
Position
2:complement(612635..616003)
Genome browser
AA seq
1122 aa
AA seq
DB search
MYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCAL
KKAPHPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVR
DIGEYAVRGGILDLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTSTRKEFVLQPMSEI
TLSSDMISRFRKNYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGP
MPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEE
AAEAAGLRIDLTPFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRAS
GKKVLVAAWTEGSLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAG
DLVVVAEQDILGDRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAA
GAPHDCLEIHYAGDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLE
IAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMD
RLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHA
SRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLK
ELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLL
RERYRGGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYD
VLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLT
QMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAV
ATLKGSGEVEDSQWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAEL
IDRFGPMPDEVQHLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGE
QGSMAKIRPDQSIVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcgtgcgcgacgggcagcgcattgccgatctggagcaggtgttgggtttcgtt
tcgcccgatctgccggtgctgcacctgcccgcctgggattgcctgccttatgaccgcgtg
tcgccaggggcggatgctgcagcgcgcagacttgcggcgctcagcgcgctttgcgcactg
aagaaagcaccgcatccagccgtcattctcaccacggccaatgccgtgctgcaaaaattg
ccgccgcaggccgcacttggcgaacaggtgatctcagcgcgccccggcaaccagctcgac
atgaacgatcttgccgcacggctggagcgcaacggctttgagcgtgtctctaccgtgcgc
gacatcggcgaatatgcggtacgcggcggcattctcgatctttatgcgccgggagcggaa
gaaccgctgcggcttgattttttcggcgatacgctggaaacgatccgtgccttcgatccc
gcctcccagcgcaccaccagcacccgaaaggaattcgtgcttcagccgatgagcgaaatc
acgctctcgtccgacatgataagccggtttcgcaagaattatgtggccatgttcggcgcg
ccgcagcgtgacgatgcgctttatcaggccatcagcgaaggccgccgttttgctggcatg
gaacattggctgccgcttttctatgacaatctggagacagttttcgaccatgccgggcca
atgccggtcgtgttcgaccatctggtgcatgaggcgctgaccgagcgccacaccatggtt
gtggaccattacgaagcgcgactgcggcaggcggagggcaaagaggcgggcagcgatgcc
gtgccttacaagccggtaaagccggaaatgctctatcttacgccgggccaggttgaagaa
gccgccgaggccgctggcctgcgtattgaccttacgccattcggcgcgccggaggtttcc
ggccggaccattattcatgccgatgtgcacaagggccgcagctttgccgaggagcgcgcc
gcaaccgacgtgaacctgtttgaagccgtggtgaaacatattgcagacctgcgcgcctcc
ggcaaaaaggttctggttgccgcctggaccgaaggttcgctcgaccggctctgtcaggtt
ctggacgaacacgggcttgaaaaaatagagaccgtcgataggctttccaccgtcaaggcc
ctgtcgcgcgacaaggtgacggcggcggtgctggcggtcgaaagcggcttcgatgcgggc
gatctggtggtcgtggcggagcaggatattctgggcgacaggctcatccgccgctccagg
cgccgcaagcgcgatcaggatttcatctcggaagtcgcctcgctgacggctggcgatatc
gtcgtccatgtcgatcacggcattgggcgctttatcggcctcaagacgattactgcggca
ggcgccccgcatgactgccttgaaatccattatgcgggcgatgaccgcctgtttctgccg
gttgagaatatcgagcttctgtcgcgctatggctcggaagggtccgatgcggttctcgac
aagctgggcggtggcgcatggcaggcgcgcaaggcaaaactcaagaaacggcttctggaa
attgccggccatctgatccagattgccgccgaacgccagatgcgcggtgcgcctgtgatg
acgccgccggacggtctttatgcggaatttgccgcgcgctttccctatgatgagactgac
gaccagttgacggcaatcgaggccgtggcggatgatcttgcgcaaggcaagccgatggat
cgcctcatctgcggcgatgtcgggttcggcaagacggaagtggcgctgcgcgccgccttc
atcgccgcgatgagcggcgttcaggtggcagtggtcgtgccgaccacgcttctttcgcgc
cagcatttcaagaccttctccaaccgctttcacggcctgccgatcaatgtggcccacgcc
tcacgcctcgtcggcgcgaaggagctggccgccaccaaaaaggggctggaagagggaacg
gtcgatattgtcgtcggcacacacgcgcttttgggcagctccatcaagttcaagaatctc
ggccttctcattatcgatgaggagcagcatttcggtgtgaagcacaaggaacggctgaag
gaactgaaatccgacgtccatgtgctgaccctttcggccacgccgatcccgcgcaccctg
caacttgcgctgaccggcgtgcgtgaactttcgctcatcaccacgccgccggtggaccgc
atggcggtgcgcaccttcgtctcgccattcgatccgctcgtgatccgcgaaacccttttg
cgtgaacgctatcgcggcggccagagcttctatgtcgtcccacgcatagccgacctcacg
gatattgaagaattcctgaaggagcatgtgccggaactgaaagtggccgtggcccatggc
cagatggcgccgggtgtgctggatgacatcatgaatgccttctatgacgggcagtatgat
gtgcttctttccacaaccatcgtggaatcgggcctcgatattccaaccgccaacaccatg
atcgtgcatcgtgccgatatgttcgggctggcgcaactctatcagttgcgcggccgcgtg
ggccgctccaagcagcgcgctttcgcgctgttcacgctcccggcgggcaagatgctgacg
cagatggccgaacgccgtctgaaagtgctgcaatcgctcgacacgcttggcgcgggcttc
cagcttgcaagccacgacatggatattcgcggcgcaggcaatctgctgggcgaggaacag
tcgggccacatcaaggaagtgggcttcgagctttaccagcaaatgcttgaagaagcggtt
gcgacgctgaagggctccggcgaagtggaagacagccagtggtcgccgcagatcgccatt
ggtacggcggtcatgatcccggaagcctatgtgcccgacctgcaattgcgccttggcctt
tatcgccgtctggccgatctggaagagccgcaggatatcgatgcctttggtgcggaactc
atcgaccgtttcggcccgatgcccgacgaagtgcagcatcttctcaagatcgtctatatc
aaggcgctctgccgccgcgccaatgttgagaaactcgatgccgggccgaagggcgtggtt
atccagttccgccacgcgaccttcaacaatccggtcggtctggtaaaaatgatcggcgag
caggggtccatggcgaagatcaggccggaccagagcatcgtcttcatccgcgattggccg
acaccggaaaagcgcctcaacggctccgccgtcatcatgacacagcttgcaaagattgcg
gcggcctga
DBGET
integrated database retrieval system
