Burkholderia pseudomallei BPC006: BPC006_II2352
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Entry
BPC006_II2352 CDS
T02301
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpq
Burkholderia pseudomallei BPC006
Pathway
bpq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BPC006_II2352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpq03021
]
BPC006_II2352
Transcription machinery [BR:
bpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BPC006_II2352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7853
Motif
Other DBs
NCBI-ProteinID:
AFR20277
LinkDB
All DBs
Position
II:complement(2413757..2415799)
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AA seq
680 aa
AA seq
DB search
MTKKLNEVSVDDDANQSDDQPTAASGKGEKAKARDRRAKEKALLKEAFATSTPGTAEELE
ERRTKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLRHMVMAISACPTTIADILAMAERVANEESRVDELVDGLIDPNAADTDGFSEK
DAEEIENEDAEAEEDDEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHIVVDK
CGMPRSEFIARFPGSETDLDWAEKVAAEGHSYGAILSRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaacgaagtatccgtcgatgacgacgcaaaccagagcgacgaccag
cctaccgctgcgtcgggcaaaggcgaaaaggccaaggcgcgcgaccgtcgcgccaaggaa
aaggcgctgctgaaggaagcgttcgcgacgagcacgcccggcacggccgaggagctcgaa
gagcgccgtacgaagctgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacg
tacgccgaaatcaacgaccatctgccggacaacttcacggaaacggaagcgctcgaaggc
atcatcggcacgttcaacgacatgggcgtcgcggtgtacgagcaggcgcccgacgccgag
acgctgctgttgaacgacaatgcgcccgccgcgtcgtccgacgatgaagtcgaggaggaa
gcggaagtcgcgctgtcgaccgtcgattccgaattcggccgcacgaccgatccggtgcgg
atgtacatgcgcgagatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgagatc
gcgaagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcgtgcccgacg
acgatcgccgacatcctcgcgatggccgagcgcgtggcgaacgaggagagccgcgtcgac
gagctcgtcgacggcctgatcgatccgaacgccgccgataccgacggcttctcggagaag
gacgccgaggaaatcgagaacgaggacgcggaagccgaagaggacgacgaagaggaagaa
gaggacgacgacggcgccgcgcaggcgaccgccaacgcggcccagctcgaagcgctcaag
cgcgcgtcgctcgagaagttcgcgctcatcagcgaatggttcgacaagatgcgccgcgcg
ttcgagaaggaaggctacaagtcgaagtcgtacctgaaggcacaggaaacgatccagaac
gagctgatgtcgatccgcttcaccgcgcgcaccgtcgagcgcctgtgcgatacgctgcgc
gcgcaggtcgacgaagtgcgccaggtcgagcgtcagatcctgcacatcgtcgtcgacaag
tgcgggatgccgcgctcggagttcatcgcgcgcttcccgggcagcgagaccgatctcgac
tgggccgagaaggtcgcggccgaaggccattcgtatggggcgatcctgtcgcgcaacatt
ccggcgatccgcgaacagcagcagcgcctgctcgacctgcaggcgcgcgtcgtgctgccg
ctcaaggacctgaaggaaaccaaccgccagatggcggcgggcgaactgaaggcgcgccag
gcgaagcgcgagatgaccgaggcgaacctgcgcctcgtgatctcgatcgcgaagaagtac
acgaaccgcggcctgcagttcctggacctgattcaggagggcaacatcggcctgatgaag
gcggtggacaagttcgaataccgtcgcggctacaagttctcgacgtatgcgacgtggtgg
atccgccaggccatcacgcgctcaatcgcggaccaggcgcgcacgatccggattccggtt
cacatgatcgagacgatcaacaagatgaaccgcatctcgcggcagatcctgcaggaaacc
ggcctagagccggatccggcgacgctcgccgagaagatggagatgccggaggacaagatc
cgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatcggcgacgac
gacgattcccatctcggcgacttcatcgaggacaccaacacggtcgcgccggcggatgcc
gcgctgcatgcgagcatgcgcgacgtcgtgaaggacgtgctcgattcgctgacgccgcgc
gaggcgaaggtgctgcggatgcgcttcggcatcgagatgagcaccgatcacacgctcgag
gaagtcggcaagcagttcgacgtcacgcgcgagcggattcgtcagatcgaggcgaaggcg
ttgcgcaagctgcgtcatccgagccgttcggacaagctgaagtcgttcctcgaggggaac
tga
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