Burkholderia pseudomallei BPC006: BPC006_II2945
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Entry
BPC006_II2945 CDS
T02301
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bpq
Burkholderia pseudomallei BPC006
Pathway
bpq02020
Two-component system
bpq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BPC006_II2945
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BPC006_II2945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpq03021
]
BPC006_II2945
Transcription machinery [BR:
bpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BPC006_II2945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AFR20868
LinkDB
All DBs
Position
II:complement(2971883..2973358)
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AA seq
491 aa
AA seq
DB search
MSATLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDTNPFLEDVQSPDDDAAEA
GPKPGETPAADANARADDGYAERDEGPFATDASPPAGQDVPLTAELSARGSSRRSDDASD
LEPGDWMTAEPTLHEHLHDALRLCQLTRRDRTLARMIIDALDDDGYLRQALPELAAAADP
LLHPAEQELLVALRLVQSLDQPGIGARTLSECLLLQLDAMPADTPGVECAKEIAAHHLER
LARRETAEMQRRIGCDTHTLRIACTLVRRLDPRPGNQYGSTAGNYVVPDVIVRQVRNDWL
VTINPAVMPRARIHRRYAELFAQSSGSNQSPLGQQLQEARWLIRNAQKRFDTIRRVGECI
VERQRDFFRYGEIALKPLVLRDIADELGLHESTISRATGNKYMSTPHGTFEFKHFFPRKL
EAAGKGACSAAVARVLIRDMIAAEQAIDPLSDVALAQRLAGRGIVLARRTVTKYRQAMKI
PPAELRRRAPL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccacgctcgcgttgcaaatgcgtcaacacctggcgctcacgccgcgcttgcag
cagtcgctgcgtttgctccagctttcgtcgctcgagtttcaacaggaactgcgtcaggcg
ctcgataccaatccgtttctcgaagacgtgcaatcgcccgacgacgatgctgccgaagcc
gggccgaagccgggcgagacgcctgccgccgacgcaaacgcgagggcggacgacggctac
gccgagcgcgacgagggcccgttcgcgaccgacgcgtcgccgcccgccggccaggacgtg
ccgctgacggcggagctctcggcgcgcggctcgagccggcgctccgacgacgcgtcggat
ctcgagcccggcgactggatgacggccgagccgacgctgcacgagcatctgcacgacgcg
ctgcgcctttgccagctcacccggcgcgaccgcacgctcgcgcgcatgatcatcgacgcg
ctcgacgacgacggctatctgcgccaggcgctgcccgagctcgcggcggcggccgatccg
ctgctgcatccggccgagcaggaactgctcgtcgcgctgcggctcgtgcagtcgctcgat
cagcccggcatcggcgcgcgcacgctgtccgaatgcctgttgctgcagctcgacgcgatg
ccggcggacacgccgggcgtcgaatgcgcgaaggagatcgccgcgcatcacctcgagcgt
ctcgcacgccgcgagacggccgagatgcagcgccgcatcggctgcgacacgcacacgctg
cgcatcgcatgcacgctcgtgcgccggctcgatccgcgccccggcaaccagtacggcagc
acggcgggcaactatgtcgtccccgatgtgatcgtgcggcaggtgcgcaacgactggctc
gtcacgatcaaccccgccgtgatgccgcgcgcgcgcatccatcgccgctacgcggagctg
ttcgcgcaatcgagcggctcgaatcagtcgccgctcggccagcaactgcaggaggcgcgc
tggctgatccgcaacgcgcagaagcgtttcgacacgatccgccgcgtcggcgagtgcatc
gtcgagcggcagcgcgactttttccgctacggcgagatcgcgctgaagccgctcgtgctg
cgcgacatcgccgacgagctcggcctgcacgaatcgacgatctcgcgcgcgaccggcaac
aagtacatgtcgacgccgcacggcacgttcgagttcaagcacttcttcccgcgcaagctc
gaggcggcgggcaagggcgcgtgctcggcggccgtcgcgagggtgctgatccgcgacatg
atcgcggccgaacaggcgatcgatccgctgtcggacgtcgcgctcgcgcagcgtctggcg
gggcgcgggatcgtgctcgcgcgccgcaccgtcacgaagtatcggcaggcgatgaagatc
ccgcccgcggaattgcgccgccgcgcgcctctatga
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