Beta proteobacterium CB: D521_0045
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Entry
D521_0045 CDS
T02483
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bprc
Beta proteobacterium CB
Pathway
bprc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D521_0045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bprc03021
]
D521_0045
03400 DNA repair and recombination proteins [BR:
bprc03400
]
D521_0045
Enzymes [BR:
bprc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D521_0045
Transcription machinery [BR:
bprc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D521_0045
DNA repair and recombination proteins [BR:
bprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D521_0045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AGG32615
LinkDB
All DBs
Position
46553..50815
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPEGAMKRGQIMSEDEYIAKTEEYGDGAF
TAIMGAEGIRDLLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVIRA
YEAGQVELASRVAVRITEFEIVDKKAEGEARFAEKTKIYQTSVGRAILSEILPKGMSFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPSSKE
RIITEASTKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEEDCGATSGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVPNDTLLDEDHVDQIVALGIDEVKVRTVLSCLTR
FGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGTLKFSGTMRVVKNAKGEQIVISRSGEAVIIDDNGRERERHKVPYGATLLLKEDAA
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPMINLVDDKGGEVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLRGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQITDGGDTAYITGEQVERSKLYDANDAVIAQGKRPAQFENVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLSYRRARKV
REQFERDRAQMIAAEEEAMADMPVEIEAEVIAPAGEADPS
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttatttaagcaaacgcagggtgatgagcagtttgatgtcatc
aagattggtcttgcatcccctgagaaaattcgctcatggtcttttggtgaagtacgcaaa
ccagaaaccatcaactaccggacttttaagcccgagcgtgatggtttgttctgcgccaag
atttttggaccaaccaaagactacgagtgcttatgcggcaagtacaagcgtttaaagttc
cgtggcgttatctgtgagaagtgtggcgttgaagttacgcttgctaaggtacgtcgtgag
cgcatgggccacattgagttggcagcccctgtagcgcacatctggttcttgaagtcgttg
ccgtcccgtttgggtatggttctcgatatgacattgcgtgatatcgagcgcgttctttac
tttgaagcatatgtcgttgttgatcctggcatgactcctgaaggcgcaatgaagcgcggt
cagatcatgtctgaggacgagtacattgctaagactgaagagtatggtgacggtgcattt
actgccatcatgggcgctgaaggtattcgtgatctcttgcgttcgattgatatcgatcgt
gaagtggagactattcgtgctgacttaaaagccactggtagcgatgccaagatcaagaaa
tacgctaagcgcttaaaagtgctcgaggcgttccagacttcgggtattaagcctgactgg
atgatcatggaagtattgccagtattgccacctgaattgcgcccattggtgccattggat
ggcggtcgctttgctacttccgatttgaacgacctctatcgtcgcgttattaaccgtaac
aaccgtctcaagcgtttgttagagttgcgcgcaccagagataatcgttcgcaacgaaaaa
cgtatgttgcaagaagcggttgactcattgctcgacaacggtcgtcgcggtaaagctatg
actggcgctaacaagcgtccgttgaagtccttggctgagatgattaaaggtaagagcggt
cgtttccgtcaaaacttgttgggtaaacgtgttgactactcaggtcgttcagtcatcgtg
gttggtccaacattgaaattgcatcagtgcggcttacctaaattgatggccttggaattg
ttcaagccatttattttcaacaagcttgagactttgggaattgcaaccacgattaaggct
gcgaagaaagaagttgaaagccagactccaatcgtttgggacattctcgaagaagtgatt
cgtgaacatccaatcatgttgaaccgtgcgcctacattgcaccgtctcggtatccaggct
ttcgagccaatgctgattgaaggcaaggcaatccaattgcacccattagtctgcgcggca
tttaacgccgactttgacggtgaccaaatggcggttcacgttcctttgtcgcttgaagcg
caaatggaggcacgtacattgatgctggcttcgaacaacgtattgttcccagccaacggc
gagccatccatcgttccttcacaggacgtggtgttgggtctgtactacgctactcgtgac
aagattaacggtaaaggcgaaggcatggtcttcgcaaatatcactgaagtaattcgtgca
tacgaagcgggccaagttgaattggcttcccgcgttgctgtacgtattactgagtttgaa
atcgtggacaagaaggcagagggcgaagcccgttttgctgaaaagaccaagatctaccaa
acctcagttggccgtgcaatcttgtcagaaattttgcctaaaggcatgtctttcgaggaa
attaataagcctctgaagaaaaaagaaatctcacgtttgatcaatacttcattccgtaag
tgcggtcttcgtgaaacggttatttttgctgaccgcctcttgcagtctggtttccgcttg
gcgactaatgccggtatctcggttgcgatcgacgatatgctgattccaagctctaaagag
cgcatcatcactgaagcttctaccaaggttaaggaatatgacaagcagttcatgtcaggc
ctcgtaaccaatcaagagcgttataacaacgtggttgatatttggggtgccgctggtgac
caagttggtaaggcgatgatggatgagttgtcacacgttgacgtactcgaccgtaacggt
aaaactgtgcgtcaagaatcctttaactctatctatatgatggcggattctggtgcacgt
ggatctgcagcgcagattcgtcagttggctggtatgcgtggtttgatggcgaagcctgat
ggctccattattgaaactccaattactgcgaacttccgtgaaggtttgaacgtgttgcag
tacttcatctcaacccacggtgctcgtaagggtctagctgacacagcactgaagacagcg
aactctggttacttgacacgtcgtttatgcgacgtaactcaagacctcgtggtcattgaa
gaggattgcggcgcaacttctggcgtaacaatgaaggctctcgtagaaggcggcgaaatt
atcgaagcattgcgcgatcgtattttgggtcgtgtctgtatcggtgacatcgtccatcca
gatacacaagaagtcattgttcctaacgacaccttgctcgatgaagatcatgtagatcaa
attgttgctttgggtatcgacgaagttaaagttcgtacagtgttgtcttgcttaactcgc
tttggcttgtgcgctaagtgctacggtcgtgatttaggtcgcggtggtttggtcaacgtt
ggtgaggcggttggtgttatcgctgctcagtccatcggtgagccaggcacacagttgact
atgcgtaccttccatattggtggtgcagcgtcacgtgcattggttgcaagcaacattgaa
gccaagtccaatggtactttgaagttctctggcacgatgcgtgttgtgaagaacgcgaag
ggcgagcagatcgtgatttcacgttcaggcgaagcggtgatcattgacgataacggccgt
gagcgtgagcgtcataaagtaccttacggcgcaactctcctgctgaaggaagatgctgca
gtgaaagccggcgcaagcttggcaacttgggatccgttaacacgtccaattatttctgag
tacgctggtattgctcgcttcgataacgttgaagaaggcgttactgtagccaagcaggtt
gacgaagtaaccggcctctccactctggtggtgattgacggtaagcgtcgtagtgctgct
agcaaaggcgttcgtccaatgatcaacttagttgatgacaagggcggcgaagtgatgatt
gcgggtacagatcatccagtaaacatcggtttgcaagttggcgctttgatcactgttaaa
gatggtcaaaaagttgaggttggtgaagtattggcgcgtattccaatcgaatcacagaag
actcgcgacattaccggtggtttgccacgcgttgctgaattgttcgaggcacgctcacca
aaagatgctgctgtattggctaaagtcactggaactgtttccttcggtaaagaaaccaaa
ggtaagcaacgtttagtgattaccgatatggatggcgaagctaacgaattcttgattcct
aaagagaaacaagttctcgttcatgacggtcaagttgtgaacaagggcgagatgattgtg
gaaggccctgccgatccgcatgacatcttgacgctcagaggtattgaagagttggcgatc
tacatcgtggacgaagttcaagacgtttaccgtttgcaaggcgtgaagattaatgacaag
cacattgaagtaatcgtgcgtcaaatgttgcgtcgtgtgcaaattactgatggtggcgac
actgcctacatcactggtgagcaagttgagcgttctaagttatatgacgcaaacgatgct
gtgattgcacaaggtaagcgcccagctcagttcgagaatgtgttgctcggtattactaag
gcatccttgtcgacagacagcttcatctcagcggcttctttccaagaaaccacccgtgta
ttgaccgaagctgcaattatgggcaagaccgatacactccgtggcctcaaggaaaacgtc
attattggtcgcctgatccctgctggtaccggcttgtcgtaccgccgtgctcgcaaggtc
agagagcaattcgagcgtgatcgcgctcaaatgattgccgccgaagaggaagcaatggct
gatatgcctgtagaaatagaggctgaagtgattgctcctgctggggaggctgatccaagc
taa
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