Beta proteobacterium CB: D521_0474
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Entry
D521_0474 CDS
T02483
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bprc
Beta proteobacterium CB
Pathway
bprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D521_0474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprc03019
]
D521_0474
Enzymes [BR:
bprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D521_0474
Messenger RNA biogenesis [BR:
bprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D521_0474
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGG33043
UniProt:
M1SLY2
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All DBs
Position
431811..433229
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AA seq
472 aa
AA seq
DB search
MTNTVPEINSPTGAAPSSATPATITFADFGLDPKIQKAVSEQGYNTPTPIQAQSIPHVLA
GSDLMGAAQTGTGKTAAFVLPIIQKILRHASSSASPARHPIRALVLTPTRELAVQVAENA
ANYSKHTDLRAAVVYGGVDMKEQVAILRGGVEILIATPGRLLDHIGSKVANLSQVEILVL
DEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNA
AADTVKQVVHMVSSADKQRAIVKVLEARTRQGLSRQCIIFTNSRLGCARLARSLERDGIK
AGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPSMPCVINHELPFNAEDFIH
RIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDIQPLPEGSPSFAPSRSSSRSDA
PAKMSDPFFYKPYEPSAASQASPEAVNPEEKKVGITPARPAVGALLGGFKKK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgttcctgaaataaattctcctaccggcgctgctccaagcagcgccacc
ccagcaacaattacctttgctgactttggcttagatccaaagattcaaaaagcggtatct
gagcagggttacaacaccccaactccgattcaagcgcaatccattccgcacgtattggca
ggaagcgatttgatgggcgcagcccaaacgggtaccggtaagacggctgcttttgtgttg
ccaattattcaaaagattctgcgtcatgcgagtagtagtgcttcgcctgctcgtcatccg
atccgtgctttagtactaacgccgacgcgtgagctggccgttcaggttgctgagaatgcg
gcgaactattccaagcacactgatctgcgtgctgccgtggtttacggtggcgtagatatg
aaagagcaagttgccatattgcgtggtggcgtggagattttgattgccaccccaggacgc
ctgcttgatcacattggctcaaaggtagccaacctctctcaagtagagattctcgtattg
gacgaagcggaccgcatgctcgatatgggctttttgcctgacttgcagcgtatcattgat
ttgattccagcgcaacgccaaacactcttgttctcagcaacgttctcacctgaaattaaa
aaattagcgcaaagttatttgcgtacaccagtcactgttgaagtggcgcgccaaaatgct
gctgcagatactgtcaagcaagtggtgcatatggtatctagcgctgataagcaacgtgcg
attgtgaaagtgcttgaagcgcgtactcgtcaaggcttatcccgtcaatgcatcattttt
accaatagccgtttaggttgcgcccgcttggctcgctctttagagcgtgatggtattaaa
gctggtgcgattcatggcgataaaagtcagggtgagcgcactcttactttagatgcattt
aagtccggcgcgattgaagccttggttgcaactgacgtagctgcacgtggtttagatatt
ccatcgatgccttgtgttatcaatcatgagttgccgtttaatgcggaagacttcattcat
cgcattggtcgtacgggtcgtgcgggtagtaagggtgatgcgattgcattggtcgatgcc
agtgaaaaacgcttactcgacgatatcgaaaagttgatgaagcgcaagttagatattcag
ccattacctgagggtagccctagctttgcgcccagcagaagttcatcaagatcagatgcg
ccagcaaaaatgtccgacccatttttctataagccttatgagcctagtgctgcatctcag
gcatccccagaggccgtaaaccctgaggagaaaaaagtcgggattacgcctgcaaggccg
gctgttggtgctttgctcggcggctttaagaaaaagtaa
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