Beta proteobacterium CB: D521_0556
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Entry
D521_0556 CDS
T02483
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bprc
Beta proteobacterium CB
Pathway
bprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D521_0556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprc03019
]
D521_0556
03400 DNA repair and recombination proteins [BR:
bprc03400
]
D521_0556
Enzymes [BR:
bprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D521_0556
Messenger RNA biogenesis [BR:
bprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D521_0556
DNA repair and recombination proteins [BR:
bprc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D521_0556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGG33125
UniProt:
M1RRL9
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All DBs
Position
524906..526789
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AA seq
627 aa
AA seq
DB search
MFINTKGALLLQSSHQVLHDVFGFDQFRGAQESIVRHVVAGGDALVLMPTGAGKSLCYQI
PSLVRRGVGVVVSPLIALMQDQVDALTQLGVRASFLNSSLDAVSSQKVTSQLLSGDLDLI
YVAPERLMSPSFLSILDRLNAGPGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERFPRV
PRIALTATADAPTRAEIVERLSLESAEQFVSSFDRPNIKYRVLQKQSAKQQLEHFLDAEH
ADDSGIIYCLSRRSVEETAQWLKDRGWDAMPYHAGLSVETRSANQKRFLREEGVIMVATV
AFGMGIDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMTYGFGDVVSLRQMVDS
GEASEDRKRVERQKLNALLGYCESITCRHQAILRYFGETHAGGCGNCDNCLEPVATWNAT
HEVQKALSCVYRTGQRFGVTHLIDVLLGKASPRVKQFFHDQVSTFGIGSELNQAQWNSVY
RQLVASGYLDVDIALHGGLKLVDEIALPVLRGEQEVWLRKETGYSKSKATKSGAKKGSTH
PFSNIADENLWEALKAKRTELASEQGVPPYVIFHDSTLQEMVKSTPTTLDQFSHIGGVGQ
AKLERYGEHFIKVIQEKLATNKTDPAT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgttcattaatacaaagggagcattactgttgcaatcgagccaccaagtacttcatgat
gtttttggctttgatcaatttaggggtgctcaagagtcaattgttaggcatgtagtagcc
ggcggggatgccttggtcctgatgcctactggtgccggtaagtcgctgtgctatcaaatt
ccctcgctggttcgtcgtggtgtaggagtggtggtttcacccttaattgcactgatgcaa
gatcaagtagatgcgttaacccagttgggcgtcagagcttcatttctaaactctagccta
gatgcagtttcatctcaaaaagtaactagtcaattattgtctggagatcttgatttgatc
tatgtggcaccagaacgtttaatgagtcctagttttctatcaatactcgatagactcaat
gcaggccccggaattgcattattcgcgattgatgaggcgcactgcgtttcgcaatggggt
catgatttccgcccggaatatcgccagttaactgttttacacgagcgatttccgagggtg
cctcgtatcgctctaactgcaactgctgatgcaccaacccgagcagaaatcgtagagcgt
ctatcgctagaatctgccgagcagtttgtctctagttttgatcgtcccaatattaagtat
cgcgttctacaaaagcagagtgccaaacaacagttagaacactttttagatgctgagcat
gctgatgactcaggaattatttattgcctatcgcgtcgcagtgtagaagagacggcgcaa
tggttaaaagaccgaggatgggatgcaatgccctatcacgcaggtttaagtgtggaaaca
cgcagcgccaatcaaaaacgtttcttgcgtgaagagggcgtcatcatggtcgcaacagta
gcctttggtatgggcattgataagcccaatgtccgcttcgtagcccatttggatttaccc
aaaagtatggaaggttattaccaagaaacgggacgggcagggcgtgatggcttgccagca
aatgcttggatgacctacggctttggagatgtagtgagcttgcgacaaatggtggattct
ggggaagcctctgaagatcgtaagcgggtagagcggcagaaactcaatgctctactcggg
tattgtgagtctataacgtgccgccatcaagcgatcttgcgctactttggagaaacgcat
gctggaggctgcggtaattgcgacaactgtctggagccagttgctacctggaatgccacg
catgaagtgcaaaaagccttgtcatgcgtttatcgtactggtcagcgttttggcgtgacg
catttaattgatgtgcttttgggaaaagcaagtcctagagtgaagcaattttttcatgat
caagtgagtacctttggcattggttcagaactcaatcaggcgcagtggaatagcgtctat
cgtcaattggttgccagtggctatttggacgtggatattgcattacatggtggcttaaag
ttggtggatgaaattgcattgccagtgctgcgtggagagcaagaggtttggctgcgaaaa
gaaacaggctactccaagagcaaggctacgaaatctggagcgaagaagggctctacacat
cccttcagcaatattgcagatgaaaacctatgggaggccctcaaggctaagcgcactgaa
ctagcgagcgaacaaggggtgccaccctatgtgatttttcatgacagcactttgcaggag
atggttaaatctaccccaactaccttagatcaattcagccatattggtggggtagggcaa
gctaagctggagcgctatggtgaacactttattaaagttattcaggaaaaactagcgacg
aataagactgatccagctacctaa
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