Beta proteobacterium CB: D521_1050
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Entry
D521_1050 CDS
T02483
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bprc
Beta proteobacterium CB
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprc03019
]
D521_1050
Enzymes [BR:
bprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D521_1050
Messenger RNA biogenesis [BR:
bprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D521_1050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
AAA_22
HA2_N
AAA_30
NACHT
nSTAND3
T2SSE
AAA_25
AAA_11
AAA_23
SRP54
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGG33618
UniProt:
M1SNM3
LinkDB
All DBs
Position
complement(1039565..1043647)
Genome browser
AA seq
1360 aa
AA seq
DB search
MQEPINQQKPKASPATVPASNTSRRLEIRFPEELPVSGQRQIIKDALSSHQVVIVCGETG
SGKTTQLPKICLDLGRGTINGGRLIGHTQPRRIAATATAKRIAQELGTPIGQDVGYQVRF
ADKTSQGASIKLMTDGILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKR
PDLKLIITSATIDAKRFSDHFSLNGKSAPVIEVSGRLFPVEQRYEPLEPDTKQDGKKESK
EAKEIPDAVADAISKVWRDGASGAGDVLVFLPGEREIRDCAEVLRKDHVLQQRFHPEILS
LFARQSVAEQERVFNSGNGRRIILTTNVAETSLTVPNIRYVVDSGLARVKRYSYRNKVEQ
LQIEPISQAAANQRAGRCGRVSDGICIRLYSEQDYLNRTKFTDPEILRSSLAAVLLRMSS
LRLPRIQEFPFIDKPLGRAIADGVQLLDELGAIVYDDSSNDGDKDINNSFKLTPTGKQLA
DLPLDPRIGRMLLAAKEQNALREVTIIASALATQDPRDRPMDQAAAADQAHLQFADERSE
FLSFVKLWDWYQDALKHKHSNRQLENLCRSKFLSPRRLREWRDVHGQLHTMLGEKGWKEN
PSAATYEQVHLSLLTGLLGYVAKKEEDEKSQERGSKIGGYIGARGIRPFIWPGSTIGKKA
GAWILAGELQETNRMYARTIAKIEPSWVEKVAAHRLIKSLSEPFWDSRQGEVMAFERGTL
YGLPIYHGRRVRYEPHNPEDARSIFITQALVQEEMFGRMDTPALMRETEADARKKYPGSF
EFFWHNRRLIKEIEALEHRSRRPDVLVDDDLLFAFYDSRIPKDVVSREGMNAWLKKASRG
EGANQEAPDALLRLAKADLMRHEAAGITVDRYPKKMIVGGTELSLTYHFEPGSPKDGVTL
VVPLTLLNQVDGRRCEWLVPGMCEEKIHLLLKSLPQKLRRHCVPLPEYAKSFLERMLAEK
QFGVGDFLDGLITDIRKERGLEIKRSDFRPESLPLHSSMNFRLVDEHGRQLELERNLSRL
RAEYGETARTAFQAIAQQAVQEELGAEVVVSAQNTGAKTNQAVNASAIKNVEQGGYRTWD
FGELPETLEIQKGNRTLFGYPALVDRTESCDLEVFDDLLEARKHHWLGLRRLFSLSNKDT
LKALQKQLPGIRELGLLFINVGSVDGLIEQILNLAVERAFMNDPLPVSAEQFAERLQAGK
PRLALIAQEISKHALAALQAHADLQKKLAQAKAASASAYTDIQTQAQGLIFPKFVSDTPY
GQLVHFPRYLKAIAMRIDKLRANPSRDAQCQKDWESVARPWQKLVQGSRGSANYAMAEDQ
ALTDFRWQLEELRVALYAQELKTPTPMSLKRLEKILASLR
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagagcccataaaccaacaaaaacccaaagcaagccctgcgactgtgcctgcttcc
aacacctcacgccggctagaaattcgctttccggaggagttgccagtatcaggccagcgc
caaatcatcaaggatgccttgagctctcatcaagtcgtgatcgtctgtggtgagaccggt
tctggcaaaacaacccaattacccaaaatctgtctagatctcggtaggggcaccatcaac
ggtggccgcctcattgggcatactcaacctcgccgtattgctgcaactgccacagcgaag
cgcatagcccaggagctgggtactccaattggccaggacgtgggttaccaagtgcgcttt
gccgacaagaccagtcagggcgcctctatcaagttaatgactgatggcatcctgttggcc
gagactcagagggatccccagctgcgtgcctatgacaccctcatcatcgatgaggcccat
gaacgtagcctcaatattgattttctactgggctatcttcgccagttactccctaagcgc
ccagatctcaaactgatcatcacatcagccacgatcgacgccaagcgtttctcggaccat
ttttcattgaatggcaagtctgcgccggtcattgaggtcagcggacgactcttccctgtc
gagcagcgttatgaacccttggagccagacactaagcaagatggaaaaaaagagtctaaa
gaagctaaagagattccagatgcagtagcagatgcaatttctaaagtgtggcgagatggt
gcttcaggcgctggtgatgtcttagtctttttgcctggagagcgagagattcgggattgt
gccgaagttctcagaaaagaccacgttctacagcaacgctttcatccggagatattaagt
ctctttgctcgacaatcggttgcagagcaagagcgcgtattcaattctggcaatggtcga
cgcatcatcttgacgaccaacgttgcagagacttcgctaacggtgcccaatatccgctat
gtagttgacagtgggctggcacgcgtgaagcgctattcctatcgcaataaagtagagcaa
ctgcaaattgagccaatatctcaagcagccgccaatcaaagggcaggccgttgtggtcgt
gtatcagatggtatttgtattcgtctatatagcgaacaagactatttaaatcgcaccaaa
tttaccgatccagaaattctgcgtagctcgctagcggcggtattgctgcgcatgagttcc
ttgcgcttacctcgcattcaggaattcccatttattgataagcccctgggccgcgcgatt
gctgatggtgtgcagctgttagatgagctgggtgccatcgtctatgacgatagctctaat
gatggcgacaaggacattaacaatagcttcaagttaactcctaccggtaagcaattagca
gatctacccctcgacccccgaattggccgcatgctcttggcagccaaagagcaaaatgca
ttgcgtgaagtcaccatcatcgcttcagccttagctacgcaagacccccgcgatcggccg
atggatcaagccgccgctgctgatcaagcacatttacagtttgcggatgaacgttctgag
tttttgagctttgtgaagctttgggattggtatcaggatgcgctgaaacataaacatagc
aatcgccagctagagaacttatgccgtagtaaatttttatctccaagacgtttgcgtgaa
tggcgcgatgttcatggtcagctccatacgatgttgggtgaaaagggttggaaagaaaat
ccgtcagcagctacttatgagcaagtccatctatccctattaacaggccttcttggttat
gtggcaaaaaaggaagaggatgaaaaatctcaagaacgtggtagcaagatcggtggctat
atcggtgcgcgtggcattcgaccctttatttggccaggctccactattggcaaaaaagcg
ggagcttggattttggctggtgagcttcaagaaactaatcgcatgtatgcccgcacgatt
gccaaaattgagcctagttgggtggagaaggttgctgctcaccgcctcattaaatccttg
agtgagccattttgggatagtcgtcaaggtgaagtgatggcctttgagcgtggcactttg
tatggcttacctatttatcatgggcgccgagttcgctatgagccgcacaaccctgaagat
gcgcgttcaatatttattacacaggccttagtccaagaggagatgtttgggcgtatggat
actccagcgttgatgcgagagaccgaggctgatgctagaaagaaatatcccggaagtttt
gaattcttttggcacaaccgcagattgatcaaagaaatcgaagcgctagaacatcgctcc
agacgtcctgatgtcctagtagatgacgatctcttatttgctttctacgattcacgcatt
cctaaagatgtcgtcagtagagagggtatgaatgcttggctgaagaaagcatctagaggc
gagggagctaatcaggaggcgcctgatgctctcttacgtttagccaaagcagatttaatg
cgccatgaagctgctggcattacggtagatcgctatcccaaaaagatgatcgttggtggc
accgagttgagtttgacttatcactttgaaccaggcagccctaaagatggagttactctg
gttgttcccctgacgctgctaaatcaggtggatggtcggcgctgtgaatggctggtgcca
gggatgtgcgaggaaaaaattcatctactgcttaaatcacttcctcagaaactacgtcgt
cactgcgttccgctaccagagtatgcaaaatcgtttttagagcgcatgcttgcagaaaaa
cagtttggagtaggcgactttttagatggcttgattaccgatattcgtaaagaacgtggt
ttagaaatcaagcgtagcgatttcagaccagaatccttgcccctacattcttcaatgaat
ttccgtctcgtcgacgagcacgggcgacagctggaattagaacgcaatttatctcgatta
cgcgctgaatatggtgagacagctcgaactgcattccaggcgattgcccagcaagcagtt
caagaagagcttggcgctgaagtcgtagtaagcgcccaaaatactggcgccaaaacaaac
caggctgtcaatgcctccgcaataaaaaatgtagagcagggcggttatcgcacttgggac
tttggtgaactacctgaaacgctggagatccaaaaaggcaatcgcactttatttggctat
ccggctttagtggatcggacggagtcatgcgatcttgaggtgtttgatgatttgctagaa
gctaggaaacatcattggctaggtcttcgaagactattttctttgtcgaacaaagacacg
ctcaaagcgctacagaaacaactccctggaattcgggagcttggtctactctttattaat
gtgggctctgtggatggtttgattgagcaaattctgaatcttgctgtagagcgggcgttt
atgaatgatccgctaccagtgagcgccgagcaatttgccgagcgccttcaagcaggcaag
ccacgcttagctctgattgcgcaagagatttcaaagcatgccttagcagctctacaagct
cacgccgacctccaaaagaagttggctcaagctaaggccgcctcggcttccgcttacaca
gacattcagacacaagcgcagggattaatcttccctaaattcgtatcagataccccttat
ggtcagctagtgcatttccctcgctacctcaaggcgattgcgatgcgcattgataaatta
cgcgccaatcctagtcgtgatgcgcagtgtcaaaaagattgggagtctgttgccagacca
tggcaaaagctggttcaaggcagtcgtggatctgccaactatgccatggcggaagatcag
gctttgaccgatttccgctggcagctggaggagttgagggttgccttatatgcccaagaa
ttaaagaccccaacaccaatgtccttgaagcgcttagaaaagattctggccagcttgcgt
taa
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integrated database retrieval system
