Beta proteobacterium CB: D521_1135
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Entry
D521_1135 CDS
T02483
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bprc
Beta proteobacterium CB
Pathway
bprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D521_1135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprc03019
]
D521_1135
Enzymes [BR:
bprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D521_1135
Messenger RNA biogenesis [BR:
bprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D521_1135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
P-loop_SecA
Cas3-like_C_2
HEM4
CMS1
DsrH
Motif
Other DBs
NCBI-ProteinID:
AGG33703
LinkDB
All DBs
Position
1123661..1124944
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AA seq
427 aa
AA seq
DB search
MLFTDLGLSESILRAISEEGYTSPTPIQEKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLSSTAKVGGKRQLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA
IAAGLDILVATPGRLLDLMSQNCVSLANIEILVLDEADRMLDMGFLRDIKKILAALPKQR
QNLLFSATFSTEIKALADGLLNSPALIEVARSNSTNEAIAQLIHPVDRNQKHPLLAHLIK
SNQWQQVLVFTRTKHGANKLVTQLEKDGITAMAIHGNKSQSARTKALAEFKDGKITVLVA
TDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIE
KLIKQKLPQEVIAGFEPDPHAVAQPIQLRSQQHQQSRKPRPGNAGGGNGGGRPAAKRSSP
PKRSFNR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgttatttacagatctcggtttatcagaatccattcttcgcgctattagcgaagaaggc
tataccagccctacccccattcaagaaaaatccatccccgccgtattaaagggtggagat
ttactagccgcagcccaaactggcaccggtaaaacggcaggctttaccctgccgattctg
cagcgcttaagtagcaccgctaaagttggtggcaaacgtcagttacgcgtattgattttg
acccctacacgggaattagcggctcaagttcaggagtctgtcgtgacctacggcaaatac
actggcctcaagtccacagtcatttttggcggcgtcggcgccaatcctcaaatcaaagcg
attgccgcaggcctcgatatcttggtggcaacgcctggtcgcttgctggatttgatgtct
caaaattgtgtctcactcgccaatattgaaattcttgtattggacgaggcagatcgcatg
ttagatatgggtttcttacgtgatatcaaaaaaatattggcggcacttcccaagcaacgt
caaaatctactcttttcagcaaccttctcgaccgagatcaaggctttggcagatggatta
ctgaattcaccagccttgattgaggtggcgcggagtaacagcacaaatgaagctattgct
cagctcattcacccagtagaccgaaaccaaaaacatcctttgttagcgcatctgattaaa
tccaatcaatggcaacaggtcctcgtgtttactcgcactaagcatggcgccaataaattg
gttactcagcttgagaaagacggcattactgccatggcaattcatgggaataagagtcaa
agcgctcgcactaaagccttagcagaatttaaggatggaaaaatcactgtcttggttgct
accgacattgcagcccgtggaatcgatattgatcaactgccccatgtcgtgaactatgac
ttaccaaatgtatctgaagattatgtgcatcggattggcagaactggtagagcgggctcg
aatggggtggcagtttctttagtctgtgttgatgagcatcagatgcttcgcgatattgag
aaactcattaagcaaaaactaccccaggaagtgattgctggatttgagccagatccgcat
gccgtggcacaacccattcaattgcgaagccagcaacaccaacaatccagaaaacctcga
ccaggtaatgctggtggcggtaatggcggtggcagacccgctgctaagcgtagcagccca
cctaagcgtagctttaatcgctaa
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