Butyrate-producing bacterium SM4/1: CL3_23240
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Entry
CL3_23240 CDS
T02610
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bprm
Butyrate-producing bacterium SM4/1
Pathway
bprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL3_23240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprm03019
]
CL3_23240
03009 Ribosome biogenesis [BR:
bprm03009
]
CL3_23240
Enzymes [BR:
bprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CL3_23240
Messenger RNA biogenesis [BR:
bprm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CL3_23240
Ribosome biogenesis [BR:
bprm03009
]
Prokaryotic type
rRNA helicases
CL3_23240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_19
Hyccin
CobA_CobO_BtuR
CMS1
Motif
Other DBs
NCBI-ProteinID:
CBL36566
LinkDB
All DBs
Position
2035166..2036827
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AA seq
553 aa
AA seq
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METIRFEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGI
PLLEKIDPKNKKLQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL
KDGVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQ
TVMFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDM
YAPKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVAT
DVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQR
YCKTKIVPQPIPSIDDVTEIKADKILCQAEEILQDNDMDRLIDIIERKVLEEDYTTLDLA
AGLLRMIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRSGGRGNRSGGDDMARLF
INIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPREQADIVLQAMKDARI
KGKNIHIEKANRR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaatcagatttgaagaattaaacctggacgcaaagattctgcgggcagtgacg
gacatggggtttgaggcggcgtccccgattcaggcgaaggcgattccattggagctggag
ggaaaggatattatcgggcaggcccagacgggaacaggaaagactgccgcctttggtatc
ccccttctggaaaagatcgatccgaaaaataaaaagctgcaggcagttgtgctctgccct
accagagagctggcaatccaggtggctgaggagatccgaaatcttgcaaaatacatgcac
gggatcaaggtacttcccatttacggaggtcaggaaattgtaaagcagatccgctcatta
aaggatggggtgcaggtgattataggaacgccgggccgggtgatggatcacatgcggaga
aagaccatcaagtttggccaggttcataccgttgtcctggacgaggcggatgagatgctc
aatatgggctttctggaggatatggaaaccatcttaagcgaactgcccgaggaacggcag
acggtgatgttctccgccaccatgccgcaggctattgccgagattgcgaagaagttccag
aaggatccggaaatcgtgaaggtagtaaaaaaggacctgacagttcccaaggtaacccag
tattactacgatgtaaagccgaagaacaagctggaggttatgtgccgccttctcgatatg
tacgctcccaagctgtctgtcgtcttctgcaatacgaaaaagcaggtggatgagctggtg
cttgcccttcagggccgcggctactttgcagagggacttcacggggatttaaagcaggtg
cagcgtgaccgggtcatgaacggcttcaggaagggccgcacggacattctggtggcaacg
gatgtggctgccagaggaatcgatgtggacgacgtggaggctgtgtttaactatgacatc
ccccaggacgaggagtattacgttcaccgcatcggccgtaccggccgggcaggaagagag
ggaaaggccttcagccttgtggtgggcaaggaggtctacaagctcagggatattcagcgc
tactgcaagaccaagattgtccctcagccgattccgtccattgacgatgtgacagagatc
aaggcggacaagattctctgccaggcggaggagatcctccaggacaatgacatggaccgt
ctgatcgacattattgagaggaaggttctcgaggaggactataccacccttgatctggcg
gcagggcttctccggatgatcatgggtgaggataatgaggatattatcgaggattcccgt
cctctgcgctccctggatgacctgggtgactggagagacagaaattacggccgcggcaga
ggctccagatcaggcggacggggaaaccgttccggcggggatgacatggcaagactgttt
atcaacatcggaaagaatcagaatgtgaagccgggagacatcctgggcgctatcgcggga
gagtccggaatgcctggcaagatggtgggaagcattgacatgtatgataagtataccttt
gtggaagttccgagagagcaggcggacattgtgcttcaggccatgaaggatgcgcggatc
aagggcaaaaacatccatatcgagaaggcaaacaggagataa
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