Butyrate-producing bacterium SM4/1: CL3_34250
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Entry
CL3_34250 CDS
T02610
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bprm
Butyrate-producing bacterium SM4/1
Pathway
bprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL3_34250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprm03019
]
CL3_34250
03016 Transfer RNA biogenesis [BR:
bprm03016
]
CL3_34250
Enzymes [BR:
bprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CL3_34250
Messenger RNA biogenesis [BR:
bprm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CL3_34250
Transfer RNA biogenesis [BR:
bprm03016
]
Prokaryotic type
tRNA degradation factors
CL3_34250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
CvfB_2nd
KH_KhpA-B
SPATA25
KH-I_KHDC4-BBP
KH_N4BP1_2nd
Mistic
KH_2
Motif
Other DBs
NCBI-ProteinID:
CBL37082
UniProt:
D4MTJ6
LinkDB
All DBs
Position
complement(3016508..3018619)
Genome browser
AA seq
703 aa
AA seq
DB search
MYKSFSMELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVE
FEEKMYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDP
DCSPEYTAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVAST
REKVIMIEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEEL
FAAIREIVPQEEMEEAVFTDEKQKREENIRVITERLEEAFADNEEWLSVLGEAIYQYEKK
TVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQ
KLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP
YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLTD
IQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMKP
VIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVCG
TDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKRV
AKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLAPKASKGE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtataagagtttttcaatggaactggccggcagaacactgacagtagatgtcggcaga
gtggcagcacaggcaaacggcgctgcgtttatgcactatggagatacgacagtactgtcc
acagcgacagcttccgataagccgagagagggaatcgatttcttccccctgagcgttgag
tttgaagaaaagatgtacgccgtgggaaagattccgggaggcttcaataagagagagggc
aaggcttctgaaaatgcagtgctgacggcccgcgtgattgaccgtcctatgcgtcccctg
ttcccgaaggattacagaaatgacgtgaccttaaacaacctggttctgtctgtggatccg
gactgcagtccggagtacactgccatgcttggctccgccattgccacctgcatctcagac
attccatttgacggtccctgtgcgacgacacagatcggcatgatcgacggggagtttatc
gtaaatcctacctccgcccagagaaaggtttccgatatggctctgactgtcgcttccaca
agggagaaggttatcatgatcgaggccggggccaacgaggtgccggaggatgtgatgatc
caggctattttcaaggcacatgaggtaaaccaggaaattatcaaatttatcgataccatt
gtcgccgagtgcggcaaggcaaagcacagctatgaaagctgcgctgttccggaggagctc
tttgcagccatcagggagatcgtgcctcaggaggagatggaggaagctgtcttcacagat
gagaagcagaagcgtgaggagaacatccgcgttatcacagagcgcctggaggaggctttt
gctgataatgaagagtggctttctgtactgggagaggccatctaccagtatgagaaaaag
acggtgagaaagatgatcttaaaggatcacaagcgtcctgacggccgcggcatcacggag
atccgcccgctggctgccgagatcgatctgcttcccagagttcacggctccggtatgttc
acccgcggacagacccagatcttaaatatctgtacgctggctccgctgtctgaggctcag
aagttagacggactcgatgagaatgagacaagcaagagatatatgcaccattataacttc
ccgtcctactctgtaggagagaccaagccgtccagaggcccgggacgccgcgagatcgga
cacggtgctctggcagagagagctctgattccggtgcttccaagcgaggaggaattccct
tacgccatccgcacggtatctgagaccatggagtccaatggctctacttcccaggccagc
atctgtgcatccactctgtccctgatggcagcaggcgtgccgatcaaggctccggtagcg
ggaatctcctgcggtctggtgacaggcgacacagatgacgattatattgttctgactgat
attcagggacttgaggacttcttcggagatatggacttcaaggtaggcggaactcacaag
ggaatcacatccattcagatggatattaagattcatggactgacaaggccgattatcgag
gaggctattgccaagacaagagaggcaaggctctacattctcgacgagatcatgaagcct
gttatcgcagagcccagaaaagaggtaggcaagtatgctccgaagattgagcagattacc
attgatcctcagaagatcggagatgttgtgggcaagcagggcaaggtgatcaacaagatt
atcgagcagacaggcgtgaagattgatatcaacgacgacggaaatgtttctgtgtgcgga
acagataaggctatgatcgataaggctatcagcattatcagaagcattgtcacagatatt
gagccgggacaggtgcttacgggaacggttgtgcgcattatgaatttcggagctttcgtt
gagctggctccaaacaaggacggaatgatccacatttccaagctctccgacaagagagtg
gcaaaggtggaggatgtggtaaacatcggcgatgaggttaccgtaaaggtaatcgaggtg
gacaagatgggccgcatcaacctgagcatgaagccgggcgatctggctccgaaggcttcc
aaaggagaataa
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