Butyrate-producing bacterium SS3/4: CK3_12210
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Entry
CK3_12210 CDS
T02611
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bprs
Butyrate-producing bacterium SS3/4
Pathway
bprs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bprs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK3_12210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bprs03019
]
CK3_12210
03009 Ribosome biogenesis [BR:
bprs03009
]
CK3_12210
Enzymes [BR:
bprs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CK3_12210
Messenger RNA biogenesis [BR:
bprs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CK3_12210
Ribosome biogenesis [BR:
bprs03009
]
Prokaryotic type
rRNA helicases
CK3_12210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Hyccin
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CBL40957
UniProt:
D7GT15
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All DBs
Position
1231487..1233169
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AA seq
560 aa
AA seq
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METIRFDELNLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGI
PLLMKMDPENRKTQAMILCPTRELAIQVAEELRRLAKYMSGIKILPVYGGQEIVKQIRSL
KGGVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQ
TVMFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPRNKVEVMCRLLDL
YSPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVAT
DVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQR
FCKTKIVPQPIPSLDDVTAIKAEKILDDVQQHIGDDSNLERMTDIIEKRLLAEDYTSLEL
AAAFLKMAMGDDYEDIADEGRPLRDLDDLDRRGGRNDRGRNGRRRQRGDDEEYMDRKNAR
GGMTRLFINLGKNQNVKPGDILGAIAGESGIPGRLVGSIDMYDKYTFVEVPKEQADIVMD
AMNHVKIKGKSVHVEKANRR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaatcagatttgacgaacttaatttagacccgcggatcctccgcgcagttaca
gatatgggatttgaggcggcgtccccgatccaggcccaggcgatcccggttgagatggaa
ggccatgacatgatcggccaggcgcagaccggaaccggtaagaccgcagcttttggaatt
ccgcttctcatgaagatggacccggaaaacagaaagacacaggcaatgatcctctgcccg
acgagagaacttgcgatccaggtagcggaagagcttcgccgccttgcgaaatacatgtcc
gggatcaagatcctcccggtctacggcggacaggagatcgtaaaacagatccgctcctta
aagggcggtgtccagatcatcgttggaaccccgggacgtgtgatggatcatatgagaaga
aagacgatccgcaccgacgcgatccacacggtggttctcgatgaggcggacgagatgctg
aacatgggattcctcgaggacatggagacgatcctcggtgagcttcctgaggagcgccag
accgtaatgttctccgcgacaatgcctcacgcgatcgcccagattgcccagaagttccag
aaggacccgaagatggttcaggtcgtaaagaaggaactgacggttccgaaggtgacccag
tattattatgaagtaaaaccgagaaataaagtggaagttatgtgccgtctgctggatctc
tattccccgaagctctccgttgcgttctgtaacacgaaaaagcaggtggatgagctggtg
caggcactccagggccgcggatactttgcggaaggtcttcacggagacttaaagcaggag
cagcgtgaccgtgtaatgggaagcttccgaaatggcgctaccgagatccttgttgcgacg
gacgttgcggcgagaggtatcgacgttgacgatgtggaagccgtatttaactacgatatt
ccgcaggatgacgagtactatgtacaccgtatcggacgtaccggacgtgccggaagagaa
ggacgcgcattcagccttgcggtgggaagcgaggtctacaagctccgcgacatccagaga
ttctgcaagacaaaaatcgttccgcagccgatcccgtccttagatgatgtgactgcgatc
aaggcagagaagatcttagatgatgttcagcagcatatcggtgacgacagcaatttagag
cgcatgacagatattatcgagaagcgtcttcttgctgaggattacacttccttagagctt
gcggcagcgttcctgaagatggccatgggcgacgattacgaggacatcgcggatgaggga
agaccgctccgtgaccttgacgatctcgaccgacgcggcggaagaaatgaccgcggaaga
aacggacgcagacgccagagaggcgatgacgaggagtacatggacagaaagaacgccaga
ggcggcatgacaagactgttcatcaacctcggaaagaaccagaacgtgaagccgggcgat
atcttaggagccatcgccggtgaatccggaattccgggccgtctcgttggaagtatcgat
atgtatgacaaatataccttcgtggaagttccgaaggagcaggccgatatcgttatggac
gcaatgaaccatgtgaagatcaaaggtaagagcgtgcatgtggagaaggcgaaccggaga
tag
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