Butyrate-producing bacterium SS3/4: CK3_13420
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Entry
CK3_13420 CDS
T02611
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bprs
Butyrate-producing bacterium SS3/4
Pathway
bprs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bprs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CK3_13420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bprs03021
]
CK3_13420
03400 DNA repair and recombination proteins [BR:
bprs03400
]
CK3_13420
Enzymes [BR:
bprs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CK3_13420
Transcription machinery [BR:
bprs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CK3_13420
DNA repair and recombination proteins [BR:
bprs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CK3_13420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
ApbA_C
GTP_cyclohydroI
AsnRS_N
Motif
Other DBs
NCBI-ProteinID:
CBL41061
UniProt:
D7GTB9
LinkDB
All DBs
Position
1355773..1359444
Genome browser
AA seq
1223 aa
AA seq
DB search
MPETNETYQPMTFDAIRIGLASSEKILEWSHGEVKKPETINYRTLKPEKDGLYCERIFGP
TKDWECHCGKYKKIRYKGVICDRCGVEVTKSSVRRERIGHIALAAPVSHIWYFKGIPSRM
GLILDISPRVLEKVLYFASYIVLDAGNTGLQLKQVLSEKEYRDAVEKYGYGTFRVGMGAE
AVQELLKNIDLDKDSEELRKALQEASGQKRARIIKRLEVVDAFRSSGNRPEWMIMNVIPV
IPPDIRPMVQLDGGRFATSDLNDLYRRIINRNNRLARLLELGAPDIIVRNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIY
QCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQTEVWDVLEDVIKEHPVMLN
RAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTMEAQAECRFLL
LSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGMFFKSPNEALLAYENGAVTL
HARIKVRVTKTLPDGRTMTGIVDTTVGRILFNEIIPQDLGFVDRTIPGNELKPEIDFLVK
KKQLKQILEKVINTHGAIQTAITLDDIKAIGYKYSTRAAMTVSISDMTVPATKKQLLADA
EATVDRIAKNFRRGLITEEERYKEVIDVWKATDDQLTHDLLTGLDKYNNIFMMADSGARG
SDKQIKQLAGMRGLMADTTGHTIELPIKSNFREGLDVLEYFISAHGARKGMSDTALRTAD
SGYLTRRLVDVSQDLIIRETDCCESKGTIPYMEIEGFTDGKETIETLQERLTGRYIAETI
TDPDTGEVVVKANHMCTPKRAAAVIKVLEKLGRNTVKIRTVLTCKCHIGVCSKCYGANMA
TGQPVQVGEAVGIIAAQSIGEPGTQLTMRTFHSGGVAGGDITQGLPRVEELFEARRPKGL
AIIAEFGGVVTIKDTKKKREIIVTDQETGNSKTYLIPYGSRIKVADGQVLEAGDVLTEGS
INPHDLLKVKGVRAVQDYMIREVQRVYRLQGVEINDKHIEMIVRQMLKKIRVEESGDSDV
LPGVSMDVLDFNEMNEELIAAGKQPAEGKQVMLGITKASLATDSFLSAASFQETTKVLTE
AAINGKVDHLIGLKENVIIGKLIPAGTGMKRYRNIKLSTGEIEDKIQEQEAQVAEEPQEE
TDAPLEEADKIILNEDDTQDVDE
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagacaaatgaaacttatcagccgatgacatttgacgcgatccgtatcggactt
gcctcttcggaaaagattctggaatggtcccatggtgaggttaagaaaccggagaccatc
aactacagaaccttaaagccggagaaagacggtctgtactgtgagagaatctttggaccg
accaaggactgggagtgtcattgtggtaaatacaagaaaatcagatataaaggtgttatc
tgtgaccgctgcggcgttgaggtaacaaaatccagcgtccgccgtgaacgtatcggacac
atcgcgcttgccgctccggtatcccatatctggtattttaaaggtattccgagccgtatg
ggcctgatcctggatatctctccgagagtcctcgagaaagtcctgtacttcgcttcctat
atcgttctggatgccggaaacaccggtcttcagttaaagcaggtcctttctgagaaagag
taccgcgatgctgttgaaaagtatggctacggcacattccgtgtgggaatgggtgctgag
gctgttcaggaacttttaaagaatatcgatctggataaggactccgaagagcttagaaaa
gctcttcaggaggcatccggccagaagagagcgagaatcatcaaacgccttgaggtcgta
gatgcattccgcagctccggaaacagaccggagtggatgatcatgaatgtgattccggtt
atcccgccggatatccgtccgatggttcagcttgacggcggacgtttcgcgacatccgac
ttaaacgacttatacagaagaatcatcaaccgtaacaaccgtcttgcaagacttcttgag
ctcggtgctccggatattatcgtccgcaacgagaagagaatgcttcaggaggccgttgat
gccctgatcgataacggcagacgcggaagaccggttacaggccctggaaaccgtgcgtta
aagtccctttccgatatgttaaagggtaaacagggacgtttccgtcagaaccttctcggt
aaacgagttgactattccggacgttctgttatcgtcgttggaccggaacttaagatctat
cagtgcggtcttccgaaggagatggcgatcgagctcttcaaaccgtttgttatgaaggaa
ctcgttgctaacggaaccgcgcacaacatcaagaacgcgaagaagatggttgagcgtctc
cagacagaggtctgggatgtgcttgaggatgtgatcaaagagcatccggttatgttaaac
cgtgctcctactcttcaccgtcttggtattcaggcgttcgagccgatccttgtagaaggt
aaggcgatcaagcttcatccgcttgtttgtaccgcattcaacgcggacttcgatggagac
cagatggcggtccaccttccgcttaccatggaagctcaggcagagtgccgtttccttctc
ctctccccgaacaacctgttaaaaccgtccgatggtggtccggtagccgttccttcccag
gatatggtcctcggtatctattatctgacacaggagagaccgggcgcaaagggcgaggga
atgttctttaagagcccgaacgaagcacttcttgcatatgagaacggtgccgttactctt
cacgcaagaatcaaagtccgtgtgacaaagactcttccggatggaagaaccatgactggt
atcgttgatacaactgtcggacgtatcctcttcaacgagatcatcccgcaggatcttgga
tttgtagacagaacgatcccgggcaacgagttaaagccggagatcgatttcctcgtaaag
aagaaacagttaaagcagatcctcgagaaagtcatcaatacacacggagcgatccagaca
gcgatcaccctggacgatatcaaggcgatcggttacaagtactccacaagagcagctatg
accgtatctatttccgatatgactgtcccggcaacaaagaagcagctcctcgcagacgca
gaagctaccgttgaccgtatcgctaagaacttccgccgtggtcttatcacagaggaagag
cgttacaaagaagttatcgatgtatggaaagcaaccgatgaccagctgacacatgacctt
ctgacaggtcttgataaatacaacaacatcttcatgatggcggactccggagcccgtggt
tccgataagcagatcaagcagcttgccggtatgcgaggactcatggcggatacgaccggt
cacacgatcgaactcccgatcaagtccaacttccgtgaaggtcttgacgtacttgagtac
ttcatctccgcacatggtgcgagaaaaggtatgtccgataccgctcttcgtacagccgac
tccggttacctgacaagacgtcttgttgacgtatcccaggaccttatcatccgtgagaca
gactgctgtgaaagcaagggaacgatcccgtacatggagatcgagggctttacggacggt
aaagagaccatcgagacgctgcaggagagattgacaggcagatatatcgctgagacgatc
acagatccggataccggagaagttgttgttaaggctaaccatatgtgtacaccgaaacgt
gccgcagccgttatcaaggttcttgagaagctcggcagaaatactgttaagatccgtaca
gtcctgacatgtaagtgccatatcggtgtctgctccaagtgctacggcgcaaacatggcg
acaggccaaccggtacaggtcggagaggctgttggtatcattgccgcacagtccatcggt
gagcctggtacacagctgaccatgcgtacattccactccggcggtgttgccggcggcgat
atcacacagggtcttccccgtgtcgaggagcttttcgaggccagacgcccgaagggactt
gcgatcatcgctgaattcggtggtgttgttacaattaaagatacaaagaaaaaacgtgag
atcatcgttacggaccaggagacaggaaactccaagacttatctgatcccctatggttcc
agaatcaaagttgcggacggacaggttctcgaggccggcgacgttcttacagagggtagc
atcaacccgcacgacctgttaaaggttaagggcgttcgtgccgtacaggattacatgatc
cgtgaggtacagcgtgtttaccgcttacagggtgtagagatcaacgataagcatatcgag
atgatcgtgcgtcagatgttaaagaagatccgtgtcgaggagagcggcgattccgacgtt
cttccgggcgtatccatggatgttcttgatttcaacgagatgaacgaggagctcatcgct
gcaggcaaacagccggcagagggcaaacaggtcatgctcggtatcacaaaggcatccctt
gcaaccgattccttcttatccgccgcatccttccaggagaccacaaaggttcttactgag
gctgcgatcaacggtaaggtcgatcacctgatcggtctgaaagagaatgttattatcggt
aagctgatcccggctggtaccggaatgaagcgttaccgcaatatcaagctcagcacaggc
gagatcgaggataagatccaggagcaggaagcacaggttgctgaagagccgcaggaggag
acggatgctccgcttgaggaagcagataaaatcattctcaacgaggatgatacacaggat
gtcgatgagtga
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integrated database retrieval system
