Butyrate-producing bacterium SS3/4: CK3_34220
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Entry
CK3_34220 CDS
T02611
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bprs
Butyrate-producing bacterium SS3/4
Pathway
bprs03420
Nucleotide excision repair
bprs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bprs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CK3_34220
03430 Mismatch repair
CK3_34220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bprs03400
]
CK3_34220
Enzymes [BR:
bprs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CK3_34220
DNA repair and recombination proteins [BR:
bprs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CK3_34220
MMR (mismatch excision repair)
Other MMR factors
CK3_34220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
ResIII
AAA_14
AAA_11
AAA_30
DEAD
AAA_22
DUF5363
Motif
Other DBs
NCBI-ProteinID:
CBL42814
UniProt:
D7GPS9
LinkDB
All DBs
Position
complement(3467889..3469859)
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AA seq
656 aa
AA seq
DB search
MDFNKAQMTALEHRDGPMMVLAGPGSGKTTVITHRIKRLLEAGVDPSGILVITFTKAAAA
EMKERFLRLAREEDEKRRKAGKKDDHLPKNGWSLHRPEKSQQSAAEARQRAQGAGNSLEA
AGSRVSFGTFHSVFYHILKWAYRFPAGNVISGEEKRQYFKKFLDESGMEVEDEAEFISSI
INEISYVKGERLDLKYYYSQNCPEEWFKKLYDGYDEMLEQTGKIDFDDMLVMCHELFTER
KDILAAWQKKFKYILVDEFQDINLLQYQVVRMLALPENNFFIVGDDDQSIYRFRGAKPEI
MLGFEKDFPGTKRVLLGTNYRSTKEIVETSLKLIGHNKVRFEKKLEPFRGSGRPVDFRVF
DNPGHEMDTVAQSIRAYHDAGYAWNEIAVLFRTGANSGLMAERLMGYNIPFQLRDVIPNL
YSHWIAKDLFAYMEIAAGSRKRSDFYRIMNRPNRYFSRDAFDTPTVSFDRLKSFYQDRDW
MEDRICDLEADLRAMSRLKPVAAVNYIRKVIGYDDYLRSYAEFRRMKPEELFETADKLAE
SAAEFETFEAWKEHAVRYEEELKKQNLEGTREAKDRVTLSTMHSAKGLEYPVVFVVDVNE
GIVPHHKAGLPADIEEERRLFYVALTRAKDRLHVAAVRERYHRKTDVSRFIGEAGL
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggattttaataaagcacagatgacagctctggagcaccgggatggaccgatgatggtc
ttagcgggtccggggtccggaaagacaacagtaattacacacagaatcaagagactgctg
gaggcgggcgttgacccctccggcattcttgtcattacgttcacgaaagcggcggccgcg
gagatgaaggagcggtttctcagactggcgcgggaggaagatgaaaagcggagaaaggcg
gggaagaaggatgatcacctgccgaaaaacggatggagtctgcacaggccggaaaaaagc
caacagagtgcagccgaggccaggcagcgcgcgcagggagccggaaattctttggaagcc
gcgggcagccgtgtgagtttcggaaccttccattccgtcttttaccacatcttaaagtgg
gcgtaccgctttcccgccggaaatgtgatcagcggggaggaaaagcggcagtattttaaa
aagtttctcgatgagtccgggatggaggtggaggacgaggcggagtttatctcctccatc
atcaacgagatcagctacgtgaagggcgagcgccttgacttaaaatattactattcccag
aactgcccggaagagtggtttaagaagctctatgacgggtacgatgagatgctggagcag
acgggaaagatcgatttcgacgatatgctcgtcatgtgccatgagctgttcacggagcgg
aaggacatcctggctgcctggcagaaaaaattcaagtatattctggtggacgaattccag
gacatcaatcttttgcagtaccaggtggtgcggatgttagcgctgccggaaaataacttc
tttatcgtcggggatgatgaccagtccatctatcggttccgcggggcgaagccggagatc
atgctgggatttgagaaggattttccggggacgaagagagttcttcttggaacaaactac
cggtccacaaaggagatcgtggagacttcgctgaagcttatcgggcacaataaggttcgc
tttgagaagaaactggagccgttccggggatccgggcggccggtggatttcagggtcttt
gacaatccgggacatgagatggacacggtggcacaaagcatccgggcgtatcatgacgcc
gggtatgcctggaacgagattgcggtgttgttccgcacaggggcaaattccgggctgatg
gcggagcggcttatggggtacaatattccctttcagctccgggatgtgatcccaaacctc
tatagccactggatcgcgaaggacctctttgcctacatggagatcgcggcgggcagcagg
aaacggtcggatttctaccggatcatgaaccgtccgaaccggtatttcagcagggacgcc
tttgatacgccgacggtgtccttcgaccggttaaagtccttttatcaagacagggactgg
atggaggaccggatatgtgacctggaggcggatctcagggcgatgtcgaggctcaagcct
gtggcagcggtgaactatatccgaaaggtcatcgggtatgacgattatctcaggtcctac
gcggagttccggagaatgaaaccggaggaacttttcgagacagcggacaagctggcggag
agtgcggcagagtttgagaccttcgaggcctggaaggaacatgcggtgcggtacgaggaa
gagttgaaaaagcagaatctcgaggggaccagggaagcgaaagaccgggtgacactgtcc
acgatgcacagcgcgaaggggctggaatatccggtggtgttcgtggtggatgtgaatgag
gggatcgttccgcatcacaaggcgggactcccggcggatatcgaggaagagcggcggctg
ttttatgtggccctgacccgagcaaaggaccggctccatgtggcggcggtgcgggagcgg
tatcacaggaagacggatgtttcgcggtttatcggggaagcaggtttgtag
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