Burkholderia pseudomallei K96243: BPSS2211
Help
Entry
BPSS2211 CDS
T00203
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bps
Burkholderia pseudomallei K96243
Pathway
bps03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BPSS2211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bps03400
]
BPSS2211
Enzymes [BR:
bps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BPSS2211
DNA repair and recombination proteins [BR:
bps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BPSS2211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAH39696
UniProt:
Q63I59
LinkDB
All DBs
Position
2:complement(2982849..2986328)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGDAAASSRGERGRSA
LHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLEYAAFEGE
IPEGHYGAGSVIIWDRGAWTPAGGVAAARAGYRAGKLSFMLDGDKLHGGWALVRSRGLRD
SGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRGRAAEPTERDAAAPK
RARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKRASKREGTNTGNGARSGKGN
GNGKGAGKGVATPRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFGLSGAKRAALP
RTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTREGLDWSAKFAA
QLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLNGFDL
RGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDGRYVE
GRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGERRTRGAAE
TRDERRRASHASRTSRTSRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTL
RALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLR
EDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPPL
ARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSISASGRTRGGGRSASRD
RAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPW
LLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALITIDDVKGLV
GAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSF
CKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDY
LRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRA
YAHVRQRVTAALRKRLSDG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcggcaggtccgcg
cttcattacgtgatccaggagcatcacgcgcgccgcttgcattacgactttcgtctcgaa
ctcgacggcacgctcaaatcgtgggcgatcccgaaagggccgagcctcgatccttcggtc
aagcggctcgcggtgcacgtcgaggatcatccgctcgaatacgcggcgttcgagggcgag
attccggaaggccattacggcgcgggctcggtgattatctgggatcgcggcgcatggacg
cccgccggtggcgtcgccgccgcgcgcgccggctatcgcgcgggcaagctgagcttcatg
ctcgacggggacaagctgcacggcggctgggcgctcgtgcgcagccgcgggctgcgtgac
agcggcggcaagcacgagcaatggctgctgatcaaggaacgcgacggcgacgcgcgcgac
caagcggactacgacgtgctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtcc
gcgcgggcgaggcgcgggcgcgcggccgagccgacggagcgcgacgccgccgcgccgaag
cgggcgcgcgcttcagtgccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccg
cgcaccgtgtcgaacgggactgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaag
cgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagcggcaagggcaac
ggcaacggcaagggcgcgggcaagggcgtggccacaccgcgccgcaaacgcgccgccgcg
ccgcagtcgtccgacgtcgattcggccgataccgattcacccgcggcgcgcggcctcgcg
ttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgcgcggcgctgccg
cgcacgttgcggccgcaactggcgacgctcgtcgacgcgccgccgcccggcaaagattgg
ctatacgaagcgaagttcgacggctaccgcgtgctgatccggatcgatcgcggcgcggcg
tcccgcccgattgccgtttacacgcgcgaggggctcgactggagcgcgaaattcgccgcg
cagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgacggcgaggcggtc
gtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcgctcggcgccgga
cgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaacggcttcgacctg
cgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtcgccgcgcatgcg
agcgacgtgctgcgttactcggagagcctcgcgttcgaggccgccgatctgctgacgggc
gcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggccggtacgtcgag
gggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggagttcgtgattggc
ggctacacggagccggccggacggcgcagcggattcggcgcgttgctgctcggcgtgtac
gcccgggcgccgggcgacgagggcgacgagggcgaacgaaggacgcgcggcgcggccgaa
acgcgcgacgagcggcgtcgtgcatcccacgcatcccgcacgtcccgcacatcccgcaca
tcccgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcg
cggccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgctt
cgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccgttcgcggacgtg
ccgcgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgc
gaattcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgc
gaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagcc
atgaatgaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgc
accggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgctt
gcccgccatccgaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggacggg
gaggcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgact
tcgacttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgcgat
cgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcacgcgccgcgcgag
cgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgat
ccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtgg
ctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggc
ggcgagctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctgcac
ccggggctcgatccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtc
ggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaacatc
gagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcg
gtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttc
tgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggc
tgggacgatgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgccc
gagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgactat
ctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccgggg
cttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaa
tggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcc
tatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag
DBGET
integrated database retrieval system
