KEGG   Burkholderia pseudomallei NAU35A-3: BBU_591
Entry
BBU_591           CDS       T03476                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bpsa  Burkholderia pseudomallei NAU35A-3
Pathway
bpsa02024  Quorum sensing
bpsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBU_591 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BBU_591 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsa03019]
    BBU_591 (hfq)
   03036 Chromosome and associated proteins [BR:bpsa03036]
    BBU_591 (hfq)
Messenger RNA biogenesis [BR:bpsa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BBU_591 (hfq)
Chromosome and associated proteins [BR:bpsa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BBU_591 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SelB_WH1
Other DBs
NCBI-ProteinID: AIS88149
LinkDB
Position
1:720398..721042
AA seq 214 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
RESRGDGGYGSRESRGDGGYGSRESRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
QEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ
NT seq 645 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgactgacgggttgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcccgtccgggcggacgcggcccgcgc
gcgggcggcgcccacggcggcggcggacgccccggcggacgcgaaggcggcggtcatggc
ccgtacggctcgcacggcggctcgcgcgaaccccgcggcgacggcggcggctatggcgct
cgcgaatcgcgcggtgacggcggttatggctcccgcgaatcgcgcggcgacggcggctac
ggttcccgcgaatcgcgcggcgacggcggctacggttcccgcgaaccgcgtggcgacggc
ggctatggcgcgcgcgagccgcgtgaaccgcgcgagccccgcgagtcttacggcgcgccg
caagaaggcgcatcgacgccgtccggcacgcaggaacgcaacggcaacggcccggtgatc
gtcacgcgccgtcgccgttcgctcggcccaaccgacggccaataa

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