Bifidobacterium pseudocatenulatum: BBPC_0532
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Entry
BBPC_0532 CDS
T03932
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBPC_0532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsc03019
]
BBPC_0532
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_0532
Enzymes [BR:
bpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBPC_0532
Messenger RNA biogenesis [BR:
bpsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBPC_0532
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBPC_0532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
HalOD2
Motif
Other DBs
NCBI-ProteinID:
BAR03210
UniProt:
C0BPW3
LinkDB
All DBs
Position
658829..660754
Genome browser
AA seq
641 aa
AA seq
DB search
MTEFTSARDALRTYFGYDAFRPGQEGIVNAIIQGRDALGVMPTGAGKSICYQIPATLLPG
MTVVISPLISLMRDQVDALNDVGIPAAFINTTQSPDEQDLVFVQALSGRIRLLYVAPERL
ETERFRTFASRVPISLVAVDEAHCVSQWGQDFRSSYLGIGDFLKALPTRPTVAAFTATAT
ERVRRDIIGILGLRDPSVTVTGFDRANLYFDVIRMERKHKASWVASYIADHPDESGIVYC
ATRKEVESLAESLNIAVRELRAAKGEDATRIGTVAVAYHGGMSAETRDRAQRDFVTDRVP
VVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIATR
RRLLDSDYENERLTAEEQEVVRASKRRLLNAMIGYCRTTDCLHEYMTRYFGEAGGAAVRD
DGACVGGCANCGNTFETVDVTDIARAISRCVHDVNQKVGSGKIVKVLRGSKAQDLNYLHP
VDLPTYGMLSATSEVQIRDVLSQMATDGFLSISEGSMPIVRFGERAAETVAPNFHYEIKK
IERKHATKRAESPSVGSQAMGSYVPGDGDEELFAKLRALRLDIARELGKPPYIVFSDKTL
RDMVRVRPVTGEQFSQVNGVGALKLEAYGERFMEVIRDFVA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacagagtttacgtcggcgcgtgacgccctacgcacctacttcggatatgacgccttc
cgtcctggtcaagaaggcatagtcaatgcgattatccaaggtcgtgatgcgctcggcgtc
atgcccaccggtgcaggcaagtcaatctgctaccaaattcctgccacgcttcttccgggc
atgaccgtcgtcatttccccgttgatctcgttgatgcgcgatcaggtcgacgcgctcaac
gacgtgggcattccagccgcattcatcaataccacgcaaagtcccgacgaacaggatctg
gtgttcgtgcaggcgttgtcgggacggatcagactgctgtatgtggctccggaacgtttg
gaaaccgaacgtttccgcacgttcgccagtcgtgtgccgatttctctggtcgccgttgac
gaggcgcattgcgtgtcgcaatggggccaggatttccgttcgtcatatcttggtatcggc
gattttctgaaggcgttgccgacccgtccgacggttgccgcgttcactgcgaccgcgacg
gaacgggtgcgccgcgatattatcggaattctcggattgcgtgatccgtccgtcaccgtc
accggcttcgacagggccaacctgtatttcgacgtgatcaggatggaaaggaaacataag
gcttcgtgggtggcttcgtatattgcggatcatcctgacgaatccggcatcgtgtattgc
gcgacccgcaaggaagtggagtcacttgccgaatcgttgaatatcgccgtgcgcgagctg
cgtgcggcgaaaggtgaggatgcgacgcgaatcggcacggtcgcggtcgcctatcatggc
ggtatgtcggccgaaacgagggatcgggcgcaacgtgatttcgtaaccgaccgtgtgcct
gtggtggttgccacgaatgcgttcggcatgggaatcgacaagtcgaacgtgcgttatgtg
atccaccataatatgccggaatcgatcgaagcgtactatcaggaggcaggtcgtgcgggg
cgtgacggcgagccgagccggtgcacgttgctgtggaatgaatctgatattgctacgagg
cggaggctgcttgattcggattatgagaacgagcgtttgaccgctgaagagcaggaggtt
gtgcgtgcatcgaaacggcgtctgctcaacgctatgatcggttattgccgtactacggat
tgtctgcacgagtatatgaccaggtatttcggcgaggccgggggagcagccgtccgcgat
gacggcgcatgcgtgggaggatgcgcgaactgcgggaatacgtttgaaaccgttgacgtc
acggatatcgcgcgggccatcagccgctgcgtgcatgacgtgaaccagaaggtcggttcg
gggaagatcgtcaaagtgctgcgagggtcaaaagcgcaggatttaaactatcttcatcct
gtcgatctgccgacgtacggcatgttgagcgcgacttcggaggtacagattcgtgacgtg
ctcagccagatggcgacggatggttttctttccatttcggaaggctccatgccgatcgtt
cgctttggtgaacgtgcggcggaaacggtagcgccgaattttcattatgaaatcaagaag
atcgaacggaagcacgctacgaaacgtgcggaatcgccgtccgtaggctctcaggccatg
ggatcgtatgtgccgggcgacggagacgaggaattgttcgccaaactgcgcgcgttgcgg
cttgacatcgcccgcgaactcggtaaacccccgtatatcgtcttttccgataaaacgttg
cgcgatatggtgcgtgtcaggccggtcaccggcgagcaattctcgcaagtcaatggcgtt
ggtgcgctcaaattggaagcgtatggcgaacggttcatggaagtgatccgcgatttcgtt
gcatga
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