Bifidobacterium pseudocatenulatum: BBPC_0930
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Entry
BBPC_0930 CDS
T03932
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBPC_0930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_0930
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBPC_0930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBPC_0930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_23
AAA_16
RsgA_GTPase
nSTAND1
AAA_21
nSTAND_NTPase5
AAA_22
APS_kinase
DnaJ_CXXCXGXG
AAA_25
NACHT
cobW
Mtrc-MtrF_II-IV_dom
Viral_helicase1
TP0900_4th
Cytochrome_C7
Cytochrom_c3_2
Motif
Other DBs
NCBI-ProteinID:
BAR03608
UniProt:
C0BTG5
LinkDB
All DBs
Position
1143151..1146138
Genome browser
AA seq
995 aa
AA seq
DB search
MATKRNNAANGDVIVERVLTSDAFLAREIKKAPLKTKNGSLTADLKHLPNDLKITIQGAR
EHNLKNVDLEFPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVESLSAYARQFLGQMDK
PDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTGIPHCPECGALVSAQ
TPQQMVDALLQYPERTRFQILAPVVRGRKGEFEDLLELLRGDGYARALIDGEMKQLSDDI
KLTKQKKHTIEVVVDRLVVKDGIRQRLTDSIETALKLAKGIVVADFVDLDEKDPDRRKPF
SEKRACPNGHQLELDEIEPRTFSFNAPYGACPVCTGIGYKLEIDPELVIPDPSKTLNENA
IEPWGMTKGTGEYYRHVLEGLGDEMGFDLDTPWKDLPEEARQAIMYGRDFKVQVSYRNRW
GRMREYSTGFEGVVRTLMRRHDETDSDQMKQYYESYMREVPCQACQGRRLRPEVLAVTVG
GESIADVCDMSAETSLAWMDGLQLEGSAAQIAGEVLKEIRARLGFLNDVGLNYLTLSRAA
KTLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNERLITTLHHLRDLGNTLIVV
EHDEDTIKNADWVIDIGPGAGEHGGEVIYSGPAKKLVDAPRSVTGDYIAGRRKIEVPQSR
RKVRKTKQLRVVGARENNLKDLTVNFPLGVFTCVTGVSGSGKSTLVNQILYPVLADKLNG
ARIVPGKHTRVEGVGQCDKVIHVDQNPIGRTPRSNPATYTGVWDKIRTLFAKTPEAQVRG
YGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVDCEECHGKRYNRETLEVKYNGKSV
ADVLGMPIEEAAQFFKAYPSISRYLDTLVQVGLGYIRLGQPAPTLSGGESQRVKLATELQ
RRSTGKTVYILDEPTTGLHFEDVRKLLLVLQGLVDKGNTVIVIEHNLDVVKSADWIIDLG
PEGGDGGGTIVTEGTPEQVAQCEQSWTGKFLKGML
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaccaaacgcaacaacgcagcaaacggcgacgtcatagtcgaacgcgttctcacc
agcgacgcattcctcgcaagagaaatcaaaaaagcccctctcaaaacgaaaaacggttca
cttacagccgacctcaagcacctgcccaacgacctcaaaatcaccatccaaggcgctcgc
gagcataatctgaagaacgtggatcttgagtttccgcgcaatcgcatggtggtgttcacc
ggactgtcgggttctggcaaatcctcgctcgccttcgatacgttattcgccgaaggccaa
cgcagatatgtggagtcgctgtcggcgtacgcaaggcagttcctggggcaaatggacaag
cccgacgtcgatttcatcgaaggtttgagccctgcggtgtcgatcgatcagaagaccacg
aaccgcaatccacgttcgactgtcggcacgattaccgagatttacgattatctgagattg
ctgtttgcccgcactggcattccgcattgcccggaatgcggcgcgttggtcagcgcacag
acgccgcaacagatggtggacgcgttgctgcagtatccggagcgcacacgattccagatt
ctcgcgccggtcgtccgtgggcgtaagggcgagttcgaggatctgcttgaactcttgcgg
ggcgacggctacgcacgagcgctgattgacggcgaaatgaagcagctgtccgacgacatc
aaactcaccaagcagaaaaagcacaccatcgaagtggtggtggatcgactggtggtcaag
gacggcatccgtcagcgtctgaccgattccattgaaaccgcattgaagctcgccaagggt
atcgtggtggccgattttgtggatttggatgagaaggatcctgaccgccgtaagcctttt
tccgaaaaacgcgcatgcccgaacgggcatcagcttgaacttgatgagattgagccgcgc
acgttctcgttcaacgccccgtacggtgcctgcccggtatgcacgggcatcggatacaag
ctggagattgatccggaactggtgattcccgatcccagcaagacactgaatgagaacgcc
atcgaaccgtggggcatgaccaaaggcaccggcgaatattatcgccatgtgcttgagggg
ctcggcgatgagatgggtttcgatctcgacaccccttggaaggatcttccggaagaggcc
cgtcaagccattatgtatgggcgtgatttcaaggtgcaggtctcgtatcgtaaccgttgg
ggtcgtatgcgcgaatattccaccggtttcgaaggcgtggtgcgtacgctgatgcgtagg
catgacgagaccgactccgatcagatgaagcagtattacgaatcgtatatgcgtgaagta
ccttgtcaggcatgccaaggccgtaggcttcgtccggaagtgctggcggtgaccgttggc
ggggaatccattgccgatgtgtgcgacatgtccgctgagacaagcctcgcatggatggac
ggcttgcagcttgaagggtcggccgcgcagatcgccggcgaggtgttgaaggagattcgt
gcccgtcttggattcctcaacgacgtcggactgaactatctgacactgtctcgtgccgcc
aaaaccttgtctggcggcgaggcgcaacgtattcgtttggcgacccagatcggttccggt
ttggtgggcgtgatgtatgtgctcgacgaaccatccatcggcttgcaccagcgtgacaat
gagcggctgatcaccactctgcatcatctgcgcgatcttggcaacacgctgatcgttgtg
gagcatgacgaagacactatcaagaacgctgattgggttattgacatcggacctggagct
ggcgagcatggcggcgaagtgatctattccggtcccgcgaaaaagctcgttgacgctccg
cgttcggttacgggcgactacattgccggccgccgaaagatcgaggtcccgcagtcccgt
cgcaaagtacgtaagaccaagcagttgcgcgtggttggagcccgcgaaaacaatctgaag
gatttgacggtcaacttcccactgggagtattcacttgcgtgacgggtgtttcgggttcc
ggtaaatccactttggtcaatcagattctgtacccggtgcttgccgacaaacttaacggt
gcgcgcatcgtgcccggcaagcatacccgtgtggaaggtgtgggccagtgcgacaaagtg
atccacgttgaccagaatccgatcggacgcactccacgttccaatccggccacctatacc
ggagtatgggataagatccgcacgctgttcgccaaaacccctgaagcgcaagtccgtgga
tacggtccggggcggttctcgttcaatgtcaagggtggccggtgcgaagcatgccatggc
gacggcactttgaagatcgaaatgaacttcctgccggacgtgtatgtggactgtgaggaa
tgccatggcaaacgctacaaccgcgaaacgttggaggtgaaatacaatggcaaatccgtt
gccgacgtgcttggcatgccgatcgaagaggctgcccagttcttcaaagcgtatccctcc
atctcccgctatctcgacacgcttgtgcaggtcggacttgggtatatccgactcggacag
cctgctccaacgctttccggcggcgaatcgcagcgtgtgaagcttgcgaccgagttgcag
cgaaggtctacgggcaaaaccgtgtatattcttgacgaacctaccacgggtttgcatttt
gaagatgtgcgcaaactgctgcttgtcttgcagggattggtggataagggcaataccgtt
attgtcattgaacacaatctcgatgtggtcaagtcggccgattggatcatcgaccttggg
ccggaaggcggtgacggaggcggcaccatcgttaccgaaggtacgccggaacaggtggct
caatgcgaacagtcttggaccggcaagttccttaagggcatgctgtga
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