Bifidobacterium pseudocatenulatum: BBPC_1004
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Entry
BBPC_1004 CDS
T03932
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc00260
Glycine, serine and threonine metabolism
bpsc00460
Cyanoamino acid metabolism
bpsc00630
Glyoxylate and dicarboxylate metabolism
bpsc00670
One carbon pool by folate
bpsc00680
Methane metabolism
bpsc01100
Metabolic pathways
bpsc01110
Biosynthesis of secondary metabolites
bpsc01120
Microbial metabolism in diverse environments
bpsc01200
Carbon metabolism
bpsc01230
Biosynthesis of amino acids
bpsc01240
Biosynthesis of cofactors
bpsc04981
Folate transport and metabolism
Module
bpsc_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
BBPC_1004
09102 Energy metabolism
00680 Methane metabolism
BBPC_1004
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
BBPC_1004
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
BBPC_1004
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
BBPC_1004
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
BBPC_1004
Enzymes [BR:
bpsc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
BBPC_1004
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
Aminotran_5
DegT_DnrJ_EryC1
SelA
Motif
Other DBs
NCBI-ProteinID:
BAR03682
UniProt:
C0BTP5
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All DBs
Position
complement(1221945..1223252)
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AA seq
435 aa
AA seq
DB search
MTASPLAQTPNDMFNAPIAEADPEIAEVLNAELSRQQNGLEMIASENFVPRAVLQAQGSV
LTNKYAEGYPGRRYYGGCEQVDKIETIARERAKSLFGAEYVNVQPHSGAQANAAVYQALV
KPGDTVLGLALDHGGHLTHGMKINFSGRFYHAEAYGVNPETFRIDPEIIRQRALETHPAM
IIGGWSAYPRIEDFKAMKEIADEVGAKFWVDMAHFAGLVAAGLHPSPVPYADVVSSTAHK
TLGGPRSGFILAKQDYAKKLNSAVFPGQQGGPLMHVIAGKAVAFKVAASPEFKDRMQRTL
DGAKILAERLMSDDVKNNGISVLTGGTDVHLVMVDLRNSEMDGQQGEDLLAQCGITINRN
TVPFDPRPASVASGLRIGTSALATRGFGNKEYEEVADIIGTALAAGKDADVEALRARVDK
LAEDFPLYPGLDQIH
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcgcctctcgcgcaaactccgaacgacatgttcaacgcgcctatcgccgaa
gcagaccccgaaatcgccgaggtactcaacgctgagttgtctcgacagcagaacggcttg
gagatgatcgcctccgaaaacttcgtgccgcgtgccgtgcttcaggctcagggttccgtg
ctgaccaacaagtatgccgaaggctatccgggacgccgctactatggtggctgcgagcag
gttgacaagatcgaaaccattgcccgtgagcgtgccaagagcctgtttggcgccgaatac
gtcaacgtgcagcctcactccggcgcacaggccaatgcagccgtctaccaggcgctcgtc
aagccgggcgacaccgtgctcggtcttgccctcgatcatggcggacatctcacccacggc
atgaaaatcaacttctccggacgtttctaccatgccgaagcctacggagtcaatcctgaa
accttccgcatcgatcctgaaatcatccgccagcgcgcgcttgaaacccacccggccatg
atcatcggcggctggagcgcctacccgcgtatcgaagacttcaaggccatgaaggaaatc
gccgacgaagtcggagccaagttctgggttgatatggcacacttcgcgggccttgtcgcg
gccggactgcacccgagcccggtcccgtacgccgatgtcgtatcctccacggctcacaag
actcttggcggtccgcgttccggtttcattctcgccaagcaggactatgccaagaagctc
aactccgcggtcttcccgggtcagcagggcggtccgctcatgcacgtcatcgcaggcaag
gccgtcgcgttcaaggtcgcagcctctccggagttcaaggaccgcatgcagcgcaccctc
gacggtgccaagatcctcgccgaacgcctcatgtccgacgatgtcaagaacaacggcatc
agcgtcctcaccggcggcaccgacgtccacctcgtcatggttgatctgcgcaacagcgaa
atggacggccagcagggcgaagacctcctcgcccagtgcggcatcaccatcaaccgcaac
accgttccgttcgatccgcgtccggcaagcgtggcttccggtctgcgcatcggcaccagc
gccctcgccacccgcggcttcggcaacaaggaatacgaagaggtcgccgacatcatcgga
accgcactcgcagcaggcaaggatgccgacgtggaagccctcagggctcgcgtcgacaag
ctcgccgaagacttcccgctgtatccgggtctcgatcagatccactga
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