Bifidobacterium pseudocatenulatum: BBPC_1179
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Entry
BBPC_1179 CDS
T03932
Name
(GenBank) DNA topoisomerase IV subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsc03032
]
BBPC_1179
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_1179
Enzymes [BR:
bpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BBPC_1179
DNA replication proteins [BR:
bpsc03032
]
Prokaryotic type
DNA Topoisomerases
BBPC_1179
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBPC_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Inp1
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BAR03857
UniProt:
C0BS05
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All DBs
Position
1406143..1408830
Genome browser
AA seq
895 aa
AA seq
DB search
MVSHRKPAKPAFDPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR
IIYQMGQMNLNPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG
NFGSLDDGPAASRYTEARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLV
NGGSGIAVGMATNMATHNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIVGRNG
IREAYETGRGALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGI
SGVIDLTDRHNGTRLVIEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALVNGRPHTMGLK
EMLQVWVDHRRVVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKT
KLIAVFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRILASAEALDNVV
ISEMDEAVATYGTPRRTVLLDEDADGKLVPVVAHGDDGVSASAMAAARAAATVSSAAADV
AAAAKAATKAGEDNAAAVALQIDDEPCAVMLSATGLIARTSEDALERWENRSSADKRVRD
DQIISIFPTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGMTENTD
PIRGERVIAAIAMPTADDSGDHAAEPAPLALGTRNGVIKRWNRESPTTMDSWSIIDLKDD
DEVLAAAEARDEDRLVFVSTDSSLLTFDAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVIP
ANKVAWNYEEGDNGLFSASGAVVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVR
SQRFLKGQDTLILAFVGTYPVHASTEGGAGVELPKPDMRRDGSGTELSAPIAIVG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgcaccgcaaaccggcaaaaccagcctttgacccgcgtacggtcaaagagaac
atcgtcgaaacaccgttgaatgaggagatgagcaagtcgttcctcgaatacgcgtattcg
gtgatctatgcccgcgcgttgcccgatgccagagatggtctgaagccggtgcaacgccgc
atcatctatcagatgggccagatgaatctcaatcctgatcgtccgtatatgaaatcggcc
cgtgtggtcggcgaggttatgggcaagttgcacccgcatggcgactccgccatctatgag
gcgatggttcgtcttgcgcagccgtttgcgatgcgattgccgttggtggatggccatggt
aacttcggttcccttgacgacggtcctgcggcctcccgttacactgaggcgcgtatggcc
caggcagcgcttggtatgaatgccaatatcggtgagaataccgttgatttcacgccgaat
tacgataacaagctgcaggagccgactgttttgcccgctgcgattccgaatctgctggtc
aatggcggttccggtattgccgtcggcatggccacgaatatggcgacgcataatctgggc
gaggtggttgccgcggccaagcatctgatgcatcatcctgatgccacgttggaagagctt
atgcgctatgttccaggtccggactggccaagtggcggcgtgatcgttgggcgtaacggc
attcgtgaggcgtatgagaccggacgtggcgcgttgaccacgcgttcagtgacgcatatc
gaaaatgtgacggcccgtaagaaagccatcgtcgtgacggaactgccgttcatggtgggg
cccgaacgagtgctggaacgtatttccgagggtgtgaagaatcgcaagctggaaggtatt
tccggggtgatcgacttgacggatcgtcataacggcactcgtcttgtcattgaaatcaaa
accggtttcgatccgaacgccgtgcttgcgcaactgctcaagcacacgccgttgcaagac
aatttcactatcaacaatgtggcgttggtcaacggccgcccgcacaccatgggtttgaag
gaaatgcttcaggtgtgggtggaccatcgtcgtgtggtgattcgccgtcgtagcgaattc
cgtaagaagaaggcgttggagcgtctgcatttggtcgaaggccttctgcttgcgatggtc
gacattgacgaagtgattcaggtgattcgttcgtctgacgatgctgatgccgcgaagacg
aagctgattgccgtattcgatttggatgagattcaggcacagtacattcttgacttgcgt
ctgcgtcgtctgacgaaaatgagccgcatcgagcttgagtcggaacgtgacgatttgaag
caacgtatcgaagagttggatcgtattctcgcttccgccgaagcgctcgacaatgtggtg
atctccgaaatggatgaggccgtcgccacgtatggcacgcctcgtcgaaccgtattgctg
gatgaggatgccgatggtaagcttgtgcctgttgtggcgcatggtgatgatggcgtgtcc
gcttcggctatggccgcagcccgtgccgccgcaacggtctcttccgcagcagctgatgtt
gccgcagccgctaaggcagcgacgaaggccggtgaagacaatgcggccgctgtggcattg
cagattgacgacgaaccatgtgcggtgatgctgtcggccacgggtttgatcgcgcgaacc
tccgaagatgcgttggaacgttgggagaatcgttcttctgccgacaaacgtgtgagggac
gatcagattatttcgattttccctaccaccacacgttcctcatatggtttgatcacatct
gccggccgtctgattgtggcgcatgtcgtggagttgccggttgtgtctgcggatggtccg
ctccatgtgactggcggcgtccatgccgaagagttgatcggtatgacggaaaataccgat
ccgattcgcggcgaacgcgtgattgctgcgattgccatgccaactgccgatgattccggt
gatcatgccgcagaacctgctcctcttgcattgggcacgcgtaatggcgtgatcaagcgt
tggaatcgtgagtcgcccaccacgatggattcatggagcatcatcgatttgaaggatgac
gatgaagtgctggctgccgctgaagcgcgcgatgaggatcgactggtgtttgtttctacc
gactcgtctttgctgacgtttgatgcgaagaacgtacgccctcagggccgtaccgcgggc
ggcatggcaggtatccgcttggctgaaggctgctcggttgccgcgtttgcggtgattccc
gccaacaaggtggcttggaattacgaggagggagacaatggcctgttctccgcgtctgga
gccgtggtgttgacggttgccggcgattccgaagcactgccgggcacggagaatggttca
gcgaaggtaaccccgttggagatgtacccgacaaagggtcgcggtaccggtggcgtgcgt
tcgcagcgtttccttaaggggcaggatacgttgatcctcgccttcgtgggcacatatccg
gtacatgcttccacggagggcggtgccggcgtggaattgccgaagccggatatgcgtcgt
gacggttctggtacggaactttccgcgccaatcgccatcgtcggctga
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