KEGG   Bifidobacterium pseudocatenulatum: BBPC_1180
Entry
BBPC_1180         CDS       T03932                                 
Name
(GenBank) ATP-dependent helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bpsc  Bifidobacterium pseudocatenulatum
Brite
KEGG Orthology (KO) [BR:bpsc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpsc03400]
    BBPC_1180
Enzymes [BR:bpsc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBPC_1180
    5.6.2.6  RNA 3'-5' helicase
     BBPC_1180
DNA repair and recombination proteins [BR:bpsc03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BBPC_1180
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr WH3_Lhr Helicase_C ResIII Cas3-like_C_2 PhoH DUF6406
Other DBs
NCBI-ProteinID: BAR03858
UniProt: C0BS06
LinkDB
Position
complement(1408963..1413576)
AA seq 1537 aa
MYECLNLFSEPTKAWFKHAFSRPTEVQQQVWPAIHSGENVLVVAPTGSGKTLCAFLSALD
RLMAGGTRSAGVDVHGEIAAAKSHAEQKAAGKGSRKKTKRGVKVLYISPLKALGADVAKN
LELPLQGISQQYEAMELPIPDVEVAMRSGDSTPEQRRRIVSHPPDILVTTPESLFLLLTS
KANSILTSVETVIVDEIHAVAGTKRGAHLAVSLERLDKLIGHPVQRIGLSATVNPVEEVA
RFLGGSQPVTVVNPGAVPAMDLKAVEPLRNMLDTSATGGSVWPVIERSILDEVLRHRTTL
IFVNSRGLAEKLTARLNDMYAESKQGTVATDLSEHRDLGSPEGREQFAGHYDSVVGSTTM
LVESHEDIDAIAMAHHGSVSKDRRKQIEEQLKRGELRCVVATSSLELGIDMGSVDLVVQV
AAPLSIASGLQRVGRADHNVGGVSHALFFPITRQQIIGVTTSMECMREGAIEPLHMPRNP
LDVLAQQTVAAAAMEDLSTNDWYELVRRSAPFQNLDRSMFDAVIGMMTGAYNSESFSAFR
PPLQYNEEAKLISARPGAQRLAVTSGGTIPDRGMYAVVLPEEGSGPGPRRVGELDEEMVY
ESRVGDVITLGTSTWQIQEITRDRVVVVPAPGRTARLPFWHGDQDGRDYGFGLAQGRLTR
ELSQGLHRREPAKNGDQNTAQTVLEAQFNRETAQRLERDGLDHNAISNLAKLLDEQCEAT
GTIPSDRDLVVERCRDEGGDWRIIIHSPYGRRVHEPWALAITTRIKQRFGFDGQVYAVDD
GIVLRLPDGYGDLPTRELLLFDVDELQRTVETQVGESVLYMARFRECAARSLFLPRTRPG
KRVPLWQQRLKAAQLLNAARTCKNFPLLLETARECLQDVYDLPALRTIMTGLHAGTILLS
EATTETPSPFAQNMLFGFVGSVMYQYDVPQAERSTQLLSMDLEVLERLLGSTDMASLLDA
EAITQVEGELAGRTFWNDLAEEDISGRVTRYAKTHGPFTADKMIAELGIDAAQAVHALDE
LDARGELIKGRFTDSGETSEKNDIQQWLHKDVFRRIRALSLAKARKAVKPVDPSVYQAFL
LNRQGVGPVGGERYEGVDGLMRVIEQLEGVFLNASVWESMVFPARVRDYQPSMLDELISS
SDVVWVGSKASGSNAKEAGEIAFYPAGSLLLNQPESAVDKLNDNETLIMPDAVLTALSGG
GAFPIQLLSAVTKTIWLEHAEAQVNPETGEIIFPAWGERQFEEALWSLVWQGKMTNSSFA
PVRALLHGGKTVRAPRRAARRRVTMRPPTPLALSGLWSAVSCGDGRTVMPNKPLDGVIEP
GMLENSDTGIGMAHTASVEERELALIDSLLDRYGVIAAPLVDKERIAGGFSALYPVLKRM
EEHGTLVRGMFVKGFGAAQFAERDTVDALRSDTQWHSQSCVALDVIDPANLTGSAIAWPE
QDYLKPARRSGSIIVLKQGEPVLFSVPKSHKIVSFTADETILRPSCAELAYVLQRQPSGS
ISFSEMNGTSLKARNEYRQILYAAGFVDSPQGMKLYC
NT seq 4614 nt   +upstreamnt  +downstreamnt
atgtacgaatgtttgaacctgttttcagagccgaccaaggcatggttcaaacatgcgttc
agtcggcccactgaagtccagcagcaggtgtggccggccatccattccggcgagaacgtg
ctcgttgtggcgcccacagggtcgggtaaaaccctttgtgcgttcctttcggctcttgac
cggcttatggcgggcgggacgcgttccgcaggagtggatgttcatggcgaaatcgcggca
gccaagagccatgcggaacaaaaagctgcagggaaaggctcccgcaagaaaacgaagcgt
ggcgtcaaagtgctatacatttcgcctctgaaggcgcttggcgctgatgtggcgaagaac
cttgaactgccattgcagggaatttcccagcagtatgaggcgatggagctgcccatcccc
gatgtcgaagtggccatgcgcagcggcgactccacacctgaacaacgtcgaagaatcgtc
agccatccgccggatattctcgtcaccacgccggaatcactattcctgctgctcacctcc
aaggcgaacagcatattgacgagcgtggagacggtgatcgtcgacgagattcatgcggtc
gcaggtacaaaacgcggcgcgcacctcgctgtcagcctcgaacgccttgataagttgatt
gggcatccagtgcaacgcatagggctttcggcaaccgttaatcccgttgaggaagtagca
cggtttctcggtggttcgcaaccggtaacggtggtgaaccccggcgctgttccggccatg
gatttaaaagccgtggaaccattgcgcaatatgctcgacaccagcgctacaggcggttcg
gtatggccggtcattgaacggtccattctcgacgaggtgttgcggcaccgaaccacattg
atatttgtcaactcgcgtggactggcggagaagctcaccgcacggctcaacgacatgtat
gcggagtcgaaacagggcacggtggcaactgatctgagtgagcaccgtgacttgggctca
ccggagggccgcgagcaatttgccgggcactatgactcggtggtaggatccaccaccatg
ctggttgaatcgcatgaagacattgatgcgattgccatggctcatcacgggtccgtgtca
aaagatagacgtaaacagatcgaagaacagttaaaacgcggcgaattacgttgcgtggtg
gccacttccagcctggaactcggcatcgatatgggttcggtggatctcgtggttcaggtg
gccgccccattgtcgatcgcatcgggattgcagcgagtgggccgtgccgaccacaatgtc
ggcggagtctcgcacgcgttgttcttccccataacccgccaacagattattggcgtaaca
accagcatggaatgcatgagggaaggggctatagaaccattgcatatgccccgcaaccct
ctggacgtgctcgcacagcagaccgtcgcagccgcggccatggaagatctttccacgaac
gattggtacgagcttgtgcgtcgttccgcacctttccaaaatctcgaccggtctatgttc
gacgctgtcatcggcatgatgacgggcgcctacaacagtgagagcttttccgcattccgt
ccaccgctgcaatacaacgaagaggcaaagctgatttccgcacgtccaggagcgcaacgc
ttggcggtgaccagtggcggcaccatacccgaccgtggcatgtacgcggtggtgcttcca
gaagagggctctggtccaggtcctcggcgagtgggcgagcttgatgaggaaatggtatac
gaatcccgcgtgggagatgtcatcactttggggacttccacctggcagattcaggagatc
acacgagatagggtagtggtggttcctgctcccgggcgcaccgcgcgcttgccattttgg
catggggatcaggatgggcgtgattatggtttcggattggcgcaagggcgtttgacgcgt
gagctcagccaaggattgcataggcgtgaaccagcaaagaatggtgatcagaatacggct
cagactgtattggaagcacagttcaaccgtgagaccgcgcaacgtttggagcgagatggt
ctcgaccataatgccataagcaatcttgccaaactgcttgacgagcaatgtgaagcgacc
ggtacgattccttcggatcgtgatctcgtggtggagcgttgccgggatgaaggcggagat
tggcgcatcatcatccattcaccatatggtaggcgcgtgcatgagccttgggcgttagcc
atcaccactcgaatcaaacagcggtttggtttcgacggtcaagtgtacgcggtcgacgat
ggcattgttttacgattgccggacggttacggcgatttgcctacacgtgagctgttgcta
ttcgacgtggacgaattgcaacgcactgttgagacgcaagttggcgaaagcgtgctttac
atggctcgattccgcgaatgtgcggccagatcactgtttctgccgcgcacacgtcccggt
aagcgtgtgcctctctggcagcagcggttgaaggccgcgcaactgttgaatgcggctcgt
acttgcaagaacttccccctcttgttggaaactgcgcgcgaatgcctgcaggacgtatat
gatttgccggcattacgcacgattatgacaggcctgcatgcgggaacaatacttttatcg
gaggcaactactgaaacaccttctccgtttgcgcagaacatgctgttcggcttcgtcgga
tcggtgatgtaccagtatgacgtgccccaagccgaacgaagcacgcagttgctgtccatg
gatctggaagtgctcgaacggcttctaggaagcacggatatggcatcgttgttggacgcc
gaagctattacacaagtggagggcgagcttgctgggcgaacattctggaatgatctcgcc
gaagaagatatcagcgggcgcgtaacaagatacgccaaaacgcatggaccattcaccgct
gacaagatgattgccgaactgggcattgacgcggctcaggcggtgcatgcgcttgatgaa
ctggatgcccgaggagaactcatcaagggaagattcactgattcaggtgagacttccgaa
aagaacgatattcagcaatggctccacaaggatgttttccggcgtattcgagcattgtct
cttgccaaggccagaaaggccgtcaaaccggtcgatccgagcgtctatcaggcgtttctg
cttaatcgtcagggcgttggccctgttggaggtgaacgctacgaaggcgttgatggtctg
atgcgtgtcatcgagcagttggaaggcgtgttcctgaacgcttcggtatgggagtccatg
gtattcccggcacgtgtgcgtgactatcagcctagtatgctcgacgaactcatctcatcg
tcggatgtggtgtgggtcggttcgaaagcaagtggatccaacgccaaagaagctggtgag
atcgccttctatccagcaggttccttgctgctcaaccagcctgaatcggcggtggataag
ctgaacgataatgaaacgttgatcatgccggatgccgtgttaacggcgttaagcggtggc
ggagcatttcctattcaactgctttcagccgtgacaaaaaccatctggcttgagcatgcc
gaagcgcaggtgaaccccgaaacgggcgaaatcatctttccggcatggggcgagcggcag
ttcgaagaagccttatggtcactggtatggcaggggaaaatgacgaacagttcgttcgca
ccagtacgagcgcttctgcacggaggcaaaaccgttcgcgcaccccgtcgtgccgcgcgt
agacgcgtcaccatgcgtcctccaacaccattggcgctgagtggattatggtccgcagta
tcttgtggcgacgggcgaaccgttatgccaaacaaaccactagacggtgttatcgagccg
ggcatgctcgaaaacagcgataccggcattggcatggcgcatacggcaagtgtagaggag
cgtgagctggcgctcatcgactcattactggaccgatacggcgtgattgccgctcctttg
gttgacaaggaacggattgccggaggattttcagcgctctatccggtactcaaacgaatg
gaagaacatggcacactggtccgaggcatgttcgtgaaaggttttggcgcggcacaattc
gcggaacgagacaccgtcgacgcgctgcgcagcgacacgcaatggcacagtcaatcctgc
gttgcgctcgacgtgatcgatcccgccaatctcactggttccgcaatcgcctggccagaa
caggattacctcaaaccagcacgcagatccgggtccatcattgtgctcaaacaaggcgaa
ccggtactgttctccgtaccaaaaagccataaaattgtcagcttcaccgcagacgaaaca
atattaagaccgtcatgcgccgaacttgcctacgtattgcagcgccaacccagcggcagc
atcagcttcagcgaaatgaacggaacatcattgaaagcacgcaatgaataccggcaaatc
ctttacgccgcaggtttcgtcgatagtccgcaaggcatgaaactttactgttga

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