Bifidobacterium pseudocatenulatum: BBPC_1287
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Entry
BBPC_1287 CDS
T03932
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsc03019
]
BBPC_1287
Enzymes [BR:
bpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBPC_1287
Messenger RNA biogenesis [BR:
bpsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBPC_1287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
nSTAND_NTPase5
NACHT
Zeta_toxin
AAA_11
Cas3-like_C_2
ResIII
DUF8152
AAA_16
TsaE
SRP54
Motif
Other DBs
NCBI-ProteinID:
BAR03965
UniProt:
C0BSB6
LinkDB
All DBs
Position
1538797..1542897
Genome browser
AA seq
1366 aa
AA seq
DB search
MKFEYPSQLPVSAARSDIAEAVKSSQVVIVSGQTGSGKTTQLPKILLELGRGSHGRQIVH
TQPRRLAARTVAERIAAEMGVRLGDEVGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LMQYDTIVIDEAHERSLNIDFLLGYLTALLPKRRDLKLVITSATIDSVKFQEHFEHALHT
KVPVIEVSGRTYPVQVVYEPLGTAPALMRSVPGFETGAMPGDADYETLSAAPDAKDSREP
NVDMPTAVARACAELVIHSSHDRGPRDILVFASGERDIHDFENALRHHYGPRAIDMRRPD
AIEIVPLFARLSSKEQHRVFEPHDHQRIVIATNVAETSLTVPGIRYVVDPGTARISRYSK
SAKVQRLPIEPISQASANQRSGRCGRIADGIAIRLYSREDFETRPEFTEPEILRTSLGAV
VLHMLSVGVARTAQDVTDFGFIDPPDMKAVSDGFNELTELKAVARKHGEVVLTHTGRMLA
RIPIDVRLGRMIIEAAKSTTPNTLAAVLVVVAFLSLQDPRERPDENREEADRIHNRYADP
SSDFLTALNLWDRVFQADGEPSNSALRRICKTEYLSWLRIRQWKDLVTQLREMCKEFKFK
VGDPIPASRPPLEIRQLPSNQQAAHSLCCSWDAQGIHTSMLSGLLSMMGMQIVREPKASD
FAGLKGAARARAMKRAQKMAKNDYQGARGTHFALFPASAVAKSTPQWVMSTELVETSRLW
ARYSAQIDPAWAEPLAGSLTRTTYADPHWSGSRGSAVASAKVLLYGLPIVQDRTVQWGRI
NPLEARDFLIRQGLVEGDIQQRFSYDDFIAKNRDVLEDAADDASRTRQMAQAVSDEDLFD
FYNSVIPNTVTSVADLAKWWKSKHDEQPDLLDFDPEKVERLADAESVSLADYPDHWHTLG
TDGSPIDLRLSYVYDPHDPNDGVTVHVPLKVLSRLTPEQFTWNVPGLLDELIVGMIKSLP
KTLRVQFVPAPDTARKIRAWIDERYPDLPGSGNQQKPNLAPTNAEGVAAWPDLPHTFTQA
AISIVGAQIHPEVLTGELWSKLMPYLRVTFSVEQQLPPSRKSQHGRRHARGPVKVLGSGK
SLVELQRKFAEQAEASARQMVKKQAENAGNQGKLVEQANLLHKAGATTEARSTMLWRGAL
DVLRMPSERISSRWLGAEALMLASAPYQSTKDLTEDLQLAAVKRLLPNVDELPDDEALAN
AVLDVREVFEDTVYAVAHDVIAILKRYAEVDKAVSGKADLPMLSVLQSIREHIATLVYPG
FIGKTPPDALAPIERYLHADVLRLGKAKNDKNRDVRWAWEADEAKQLADKAMAKAEREPA
GPRHEALMKQAVTARWMLEEFYVSLWAQELGTPKPISLQRIKKALS
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatatccttcccaactgccggtttccgctgcacgtagcgatattgccgag
gcggtgaagtcgagccaagtcgtgattgtgtctggtcagacgggttccggtaagaccacg
cagctgccgaagattctgttggaattgggccgtggatcgcatggcaggcagattgtgcac
acgcagccgcgtaggctggccgctcgtaccgtggccgaacgtatcgccgcggagatgggc
gtgcgtttgggcgacgaggtcggctatcaggtgcgtttcaccgatgagagctcaccgaag
acccgtcttcgcgtggtgaccgacggtattctgttggcgcagattcaacgcgatccgaaa
ctgatgcaatacgatacgatcgttatcgacgaggcgcacgaacgtagtctcaatattgac
tttctgctcggttatttgactgcgctattgccgaaacgacgtgacctgaaattggtaatc
acgtcggcgacgattgattcggtgaagttccaggagcatttcgagcacgctttgcatacg
aaagtgccggttatcgaggtttcgggacgaacctaccccgtgcaggtcgtgtatgagccg
ctgggcaccgctcccgcgttgatgcgttccgtacccggttttgaaactggcgcgatgccg
ggcgatgccgactatgaaacgttgtcggccgctcctgacgcgaaggattcccgcgagccg
aacgttgacatgccgacggcggtggcgcgcgcctgtgccgagttggtgattcattcgagt
catgaccgtggaccgcgcgatattctcgtgttcgcctcgggcgagcgcgacattcatgat
tttgagaatgcgctgcgccatcattatggtccgcgtgccattgatatgcgtcgtcctgat
gcgattgagatcgtgccgttgttcgcgcggttgtcctccaaggagcagcatcgcgtgttt
gagccgcatgaccatcagcgtattgtgatcgctacgaatgtggccgaaacgtcgttgacg
gtgccgggcattcgttatgtggtcgaccctggcaccgctcgtatttcacgttattcgaag
agcgcgaaagtgcaacggcttccgattgaaccgatcagtcaggcgagcgcgaaccaacgt
tcgggtcgttgcggccgtattgcagatggtattgcgattcgcttgtattctcgcgaggat
ttcgagacgcgcccggaattcacggagcctgagattctgcgcacgtcgttgggtgcggtc
gtattgcatatgctgtcggtgggtgtggctcgtaccgcgcaggatgttacggatttcggc
ttcatcgatccgcctgatatgaaggcggtgtctgatggtttcaatgagttgaccgagttg
aaggccgtggcgcgcaagcatggcgaggttgtgctgacgcacacgggtcgcatgcttgca
cgcattccgatcgacgtgcgtttgggccgtatgatcatcgaggctgcgaagtcgaccacg
ccgaacacgttggccgcagtgctggtggtggtcgcgttcctaagtttgcaggatccccgc
gaacgtccggatgagaatcgtgaggaggccgaccgcattcataaccggtatgccgatccg
tccagtgattttctgaccgcgttgaacttgtgggatcgcgtgttccaagctgatggcgag
ccgagcaattccgcgcttcgtaggatttgcaagactgagtatttgagttggctgcgcatc
cgtcagtggaaggatctggtcacgcagttgcgtgagatgtgcaaggaattcaagttcaag
gttggcgatccgattccggcttcgcgtccgccgcttgagattcgtcagcttccgtcgaat
cagcaggctgcgcattcgttgtgttgttcgtgggatgcgcagggtattcatacgtcgatg
ctttcgggcttgttgtcgatgatgggcatgcagatcgtgcgtgaaccgaaggcatctgat
ttcgctggcttgaagggcgctgcccgtgcgcgtgccatgaagcgtgcgcagaagatggcg
aagaatgattatcagggtgcgcgtggcacgcatttcgcattgttcccggcttccgcggtc
gccaagtcgacaccgcaatgggtgatgagcacggagttggtggaaacgagccgcttgtgg
gcgcgatattccgcccagatcgatcccgcttgggctgaaccgttggcgggttcgttgacg
cgaaccacgtatgcggatccgcattggtcaggctcgcgtggctccgcggtggcgagcgcg
aaggtactgttgtatggtttgccgatagtgcaggatcgtacggtgcagtggggtcgtatc
aatccgctggaggcccgtgattttctgattcgtcagggtttggtcgagggcgatattcag
cagcggttctcgtatgacgatttcattgcgaagaatcgcgatgtgctggaggacgccgcc
gacgatgcgagtcgcacacgtcagatggcgcaggcggtcagtgatgaggatctgttcgat
ttttataattcggtgattcccaatactgtcacgtcggttgcggatcttgcgaaatggtgg
aagtcaaagcatgatgagcagccggatttgttggattttgatccggagaaggtggagcgt
cttgctgatgccgagtcagtgtcgttggctgattatccggatcattggcatacgttgggt
acggacggctcccctatcgatttgcggttgagttatgtgtatgatccgcatgatccaaac
gatggcgtgaccgtgcatgtgccgttgaaggtgttgtctcgtttgacaccggaacagttc
acgtggaatgttcccggattgttggatgagttgattgtcggcatgatcaagtcgttgccg
aagacgttgcgcgtgcagtttgttcccgctcctgatacggctcgtaagattcgtgcgtgg
attgatgagaggtatccggatctgcctggttccggtaaccagcagaagccgaatcttgct
cctaccaatgcggagggtgtggccgcgtggccggatttgcctcatacgttcacgcaggcg
gcaatcagcattgttggcgcgcagattcaccctgaagtgttgactggtgaattgtggagc
aagctcatgccgtatttgcgcgtgacgttctctgtggagcagcagttgcctccgagtcgc
aagagtcagcatggcaggcgtcatgcgcggggccctgtcaaggtgcttggctcgggcaaa
tcgttggtggagttgcagcgcaagtttgcggagcaagccgaggcttccgcacggcagatg
gtgaagaagcaggcggaaaacgctggaaatcagggcaagcttgtggagcaggccaatctg
ctgcataaggctggtgccactaccgaagctcgttccaccatgctgtggcgcggtgcactt
gatgttttgcgtatgccgagcgagcgtatttcgtcgcgttggttgggtgcggaggcgttg
atgttggcgtccgcaccatatcagtccacgaaggatcttactgaggatctgcagttggct
gcggtgaagcgtttgctgccgaatgttgacgaattgccggatgatgaggcgttggcgaat
gcggtgcttgatgtacgtgaagtgttcgaagataccgtgtatgcggttgcgcatgatgtg
atcgctattttgaagcggtatgcggaggttgataaagccgtgtcaggcaaggccgatctg
ccgatgttgagcgttttgcagtcgattcgtgagcatatcgccacgctggtgtatccggga
ttcattggtaagactcctccggatgcgttggcgccgattgaacggtatctgcatgctgac
gtgcttcgtttaggtaaggcgaagaacgacaagaatcgtgatgtgcgttgggcttgggag
gctgatgaggccaagcagttggccgacaaggccatggcgaaggccgaacgtgagcctgca
ggtccgcgtcatgaggcgttgatgaagcaggcggtcaccgcacgttggatgcttgaggaa
ttctacgtatcattgtgggcgcaggaactcggcacgccgaagccgatcagcctgcagcgc
atcaagaaagcgttgagctaa
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