Bifidobacterium pseudocatenulatum: BBPC_1302
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Entry
BBPC_1302 CDS
T03932
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03030
DNA replication
bpsc03430
Mismatch repair
bpsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBPC_1302
03430 Mismatch repair
BBPC_1302
03440 Homologous recombination
BBPC_1302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsc03032
]
BBPC_1302
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_1302
Enzymes [BR:
bpsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBPC_1302
DNA replication proteins [BR:
bpsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBPC_1302
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBPC_1302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BAR03980
UniProt:
C0BSD1
LinkDB
All DBs
Position
complement(1558008..1561598)
Genome browser
AA seq
1196 aa
AA seq
DB search
MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK
EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA
ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKYSKGIIASSGCPSGIIQTRLLLGQF
DEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVRA
EDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAERC
NVMFDDHEDGAFMPQFDCPEGWDETSLFLKKVEEGLERRYDGHPPIEVLKQADYECGVIC
QMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPIKHGLIFERFLN
PERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEF
SMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPDVKRVTDEAMGIE
GLIRQTGVHACATIMGSEPISNTSPLLERTDGTVTTTLEYHTCETLGLVKMDFLGLSNLT
VIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDGMRSLLKTLKPNN
FNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQE
QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSQEAAQAVWDIL
VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRMG
IQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERENDHGKYVNFPDFIRR
VPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQAEGQFDLFSDLE
DAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILVSLREMSIA
HLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESSIQCMFFGKVYETAA
PELAVDTVVQIRGQVEKRDETVSMRATEFNVPTLEAQDEKPVTIMLPPIALDQSHVQQLG
QILSNHPGPCEVKLALMDDKGNAKVLTFGDRFRVRRDTSLFAEIKILFGPSSLPLG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggctacttccggaaatttcgtgcaactgcataatcacacgcattattcactgcttgac
ggggcgtcaaagattccggatctggtcaggcgcgccaaagaactcaacatgccggccgtc
ggcatcaccgatcacggcaacatgcatggcgcatacgaaatgtggagcactgcggtcaag
gaaggcgtcaaaccgattatcggcattgaagcgtatgtgacgccggaaaccgcacgccaa
gatcaaacccgcgtcagctgggataccaactggaatcccgatatcgatccgcaacatcgc
aggcgcaaccccaacgacgtatccggcggtggcctgatcacccaccttacgatgtgggcg
gaaaccgatgagggccttgtcaatctgatgaaggcgtccactgacgcgaatctcgaggga
cgtgtcatgcgatacccccgaatggataaggaaatccttgccaaatattcgaaaggcatt
atcgcatcttccggatgcccgtcgggcatcatccaaacgcgactgctgctcggccaattc
gacgaggcattacgtgcggcaggcgaattgcaggatattttcggacgtgacaatttctat
atcgaattcatggaccacggtctgaaaatcgaaaaacaggtgaccgacggtctgctggac
attgcgaaaaaactgaacgcgccgctgctcgccaccaacgattcccattacgtgcgcgcc
gaagacgccggctctcaggatgccatgctgtgcatcaattcgggatccacgcttgacgag
ccgggacgattcaaatttgacggcaccggctactatctgaaatccgccgaagaaatgcgt
gagctgttcaaagacattcccgaagcatgcgacaatacgttggaaatcgccgaacgctgc
aatgtcatgttcgacgatcatgaagatggcgcgttcatgccccaattcgactgcccggaa
ggttgggatgagacgtcgctgttcctgaaaaaagtcgaggaaggcttggaacggcgttat
gacgggcatccgccgatcgaagtgctcaagcaggccgattacgaatgcggtgtgatctgt
cagatgcagttctgcggatacttccttgtggtggccgactacatcaactgggccaaatcg
catggtgtgatggtcgggcctggccgtggctccgcggcaggcgccatggtggcgtatgcc
atgggcatcaccgaactcgatccaatcaagcacggcttgatcttcgaacgattccttaac
ccggaacgtgtgtcgctgcctgatatcgacgtcgatttcgatccggacggccgcggtcgc
gtgcttgactatgtcggagacaagtacgggcgagacaaggtcgcgcaatgcgtgatctac
ggcaccatcaaaaccaaacaggcgctgaaggactccgcacgaatcatgggctacgaattc
tccatgggcgagcgcatcaccaaggcgttgccgccggcgcagacgggtggcaaggatatt
ccgctgcatgatattttcgagccgagttcgaagcgttatgcggaggcccgcgaattccgt
gagctttatgattccgatccggatgtgaagcgcgtcacggatgaggcgatgggtatcgaa
ggcttgatccgtcagaccggtgtgcatgcgtgcgccacgatcatgggtagcgagccgatt
tcgaatacgtcgccgctgctggaacgtaccgatggtacggttacgaccacgttggagtat
catacgtgtgaaacgcttggtttagtcaagatggacttccttggtctttccaacttgacg
gttattcgcgatacgttgaacaatatcgaggcgaatggcaagacgcgtatcgaccatacg
aagattccattggacgatcgtgccacgtacgatctgttgtcgcgaggtgacacgcttggc
gtgttccagttggattctgatggtatgcgttcgttgctgaaaacgttgaagccgaataac
ttcaacgatatttccgcattgatcgcgttgtatcgtcctggtccgatggatatggattcg
catacgaattatgcgaagcgtaagaatggtttgcagaagatcacgccgattcatcctgaa
gtggccgagccgttgaaggaagtgcttgacgaaacgtatggtctgatcgtgtatcaggag
caggtgcagtcggccgcgcgtattctggcgggttattcgttgggcaaggcagacgtgttg
cgtcgagcaatgggcaagaagaagcccgaggtgctggccaaggagaaggtgccgttcttc
gcgggcatgaaggagcatgggtattcccaggaggcggcgcaggccgtgtgggatattctt
gtgccgttttcgggctatgcgttcaacaaggcgcattcggccgcatacggtttgatctca
tattggactgcatatctgaaaacgcattatccggtggaattcatggccgcgttgctgcag
ggtgcgagtacgaacaaagacaagaccgcgttgtatttgggcgaggctcgtcgcatgggc
atccaggtgttgtctcctgacgtgaacgagtcggtgtacgagtattccgctgtcggcgat
gtggtgcgtttcggtcttggcgccatccgtaacgttggcaaggctgcggttgatgcgatt
gtcaaggaacgtgagaacgatcatggcaagtatgtgaatttccctgatttcatcaggcgt
gtgccgatggaggcgttgaatcgtcgattggttgaatcgttgattaaggccggtgcgttt
gattcgatcgatccgaaccgtcgtgccttgtttacgattcatgaggctgcgattaattcg
gtggtcggtttgaaacgcaagcaggccgaaggccagtttgatttgttctccgatttggaa
gatgccggcgaagacgatgcgggcatgggcgatgccatggtgaatgtgcccgatgtggag
gagtgggataagaaaaccaagctgaatttcgaacgtgaaatgcttggcttgtatgtgtcc
gaccatccgttgagcggtatgcagtcgattctggtgtcgttgcgtgaaatgtcgatcgcg
catctgatcgatcgcgcggcgaatatgcctgacggccagcaggtgacggtggcgggtttg
atcacgaacgtggaccgtcgtatgtcgaagaagggcaatccttgggcgattgtgaccatc
gaggatttggaaagctccatccagtgcatgttcttcggcaaagtgtatgagaccgccgct
cccgaactggcggtcgacacggtggtgcagattcgcggacaggttgagaaacgcgatgag
acggtaagcatgcgtgccacggaattcaacgtgccgacgttggaagcgcaggatgagaag
ccggtgacgattatgctgccgccaatagcgcttgaccaatcgcatgtgcagcagttgggg
cagattctttcaaatcatcctggaccctgcgaagtgaagctcgccttgatggacgataag
ggcaacgccaaggtactgacgttcggcgaccgtttccgcgtacgccgcgacacgagtctg
ttcgccgaaatcaaaatccttttcggtcccagttctctgcctttgggatga
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integrated database retrieval system
