Bifidobacterium pseudocatenulatum: BBPC_1452
Help
Entry
BBPC_1452 CDS
T03932
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBPC_1452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsc03021
]
BBPC_1452
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_1452
Enzymes [BR:
bpsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBPC_1452
Transcription machinery [BR:
bpsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBPC_1452
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBPC_1452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAR04130
UniProt:
C0BRU3
LinkDB
All DBs
Position
complement(1769241..1773254)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHEDLPGLQDEFDNDIANLEKRRNAEIEERAKKVEAD
LAELEAEGEAKGSARAKLRNSAEREMAAIRVRFDEQIQRLSAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAASKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPEDFVLPKGWEPSEIEVVDPEPGSPAVVKEER
FHDGSVLFATSYGRILFNSTLPVDYPFVNDQAPKKRLSKIVDDIATRYSTAQVAATLDAL
KDMGFTRAPWSGVSFAFSDVIQPSERDEYIEKYEAEADKVNENYEIGMLTEEERRQELID
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMKVGERDAEGNLHLVKAADGGPYSRLLATDVIDPADGETVLYKAGDALSMDVLNDLVA
HDVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVEDTERGRQVILKPDDDS
VEPIAYPVTRRAPMMVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMKAVKEGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAVVEPDKAIRDTIYPNFGLGGDESDAAFGDADLSEVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQMDLGDTL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggcctggccaccgccgacgacatc
cgtaactggagccacggtgaggtcaagaagcctgaaaccatcaactaccgtaccctgaaa
ccggagaaagacggcctgttcggcgagcagatcttcggacctacccgcgactgggaatgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgaacgctgcggtgtg
gaagtcaccaagagccgtgttcgtcgtgagcgcatgggccatatcgagcttgccgctccg
gtgacccacatctggttcttcaagggtgttccgtcccgtttgggctacctgctggacatc
gctccgaaggatctggaaaaggtcatctacttcgccgcctacatggtcaccagcgtcgat
gaggaacagcgtcatgaggatcttccgggtctgcaggacgagttcgacaacgatatcgcc
aacttggagaagcgccgcaacgcggaaatcgaagagcgtgccaagaaggtcgaagccgat
ctggctgaacttgaggccgaaggcgaagccaagggctccgcacgcgccaagctgcgcaac
agcgccgagcgtgaaatggccgccatccgcgttcgtttcgacgagcagatccagcgtctg
agcgccgtgttcgaccgcttcaagaacctgaagccgggcgacatggaaggcgacgtcgac
ctgtggcgtgagatggaagaccgctacggcgattacttcgaaggctgcatgggcgccgaa
gccattaagaagcgcctgcaggacttcgatcttgaagccgcttccaagcagctgcgcgaa
gagatcgacaccggtaccggccaacgcaaggcccgcgccctgaagcgtctgaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgattccggtc
attccgccggatctgcgcccgatggtgcagctcgacggtggccgtttcgccacttccgat
ctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgctcctgaaatcatgctcaacaacgagaagcgcatgctgcaggaagccgtcgat
tccctgttcgacaacggtcgtcgtggccgcccggtcaccggcgcctccaaccgtccgctg
aagtccctgagcgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggt
aagcgtgtggattattccggccgttccgtgatcgtggtcggtccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
cttgtcgacctcaactatgcccagaacatgaagagcgccaagcgtctcgtggaccgcggc
gactccgaagtgtggggcgtgctcgaagaggtcatcgccgagcatccggtgctcctgaac
cgtgcacctacgttgcaccgtctgggtattcaggcattcgagccgattctggtggaaggc
aaggccatccacctgccgccgcttgcctgtgccgcattcaacgccgacttcgatggcgat
cagatggcagtccacctgccgctgtccgctgaagcccaggctgaagcacgctccctgatg
atggcttccgacaatattctgaagccggctgacggccacaccgtgaccatgccgagccaa
gatatgatcctcggtctgtactacctgaccaccgtcatcgacggtgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgacaagcatgagatcgacatg
caggccaaggtgcttatccgccttccggaagactttgtgctgccgaagggctgggagccg
agcgaaatcgaagtcgtcgatccggaaccgggcagcccggccgtggtgaaggaagagcgc
ttccatgatggttccgtgcttttcgcaacctcctatggccgtattctgttcaacagcacg
ctgccggtggattacccgttcgtgaacgatcaggctccgaagaagcgtctgagcaagatc
gtcgacgacatcgcaacccgttactccaccgcacaggtggcggcaacgctggacgcgctg
aaggatatgggcttcacccgcgcaccgtggtccggtgtgtccttcgcgttctccgacgtt
atccagccgtccgagcgcgacgagtacatcgagaagtacgaagccgaagccgacaaggtc
aacgagaactacgaaatcggtatgctcaccgaagaggagcgccgtcaggaactcatcgac
ctgtggaccaagtgcaccagcgaggtttctgaggcggtcgaggaacacttcgactccaag
aacaacctggctatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggcatgcgaggcctcgtggctaacccgaagggcgagatcattcctcgaccggtg
aagtccaactaccgtgacggcctgtccgtgctggaatacttcatctcccagcacggtgca
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggctacctgacccgtcgt
ctggtggacgtttcccaggacgtaatcgtgcgcgaagaggattgcggcaccaagcgtggc
ctgacgatgaaggtcggcgagcgtgatgctgaaggcaacctgcatctggtcaaggccgcc
gatggcggtccgtactcccgtctgctcgcaaccgacgtgatcgatcccgccgacggcgag
accgtgctgtacaaggccggtgacgcgctgtccatggacgtgctcaacgatcttgttgcc
cacgacgtggaagaggtcaaggcccgttccgtgcttacctgcgaatccaagcgcggcgtg
tgcgccaagtgctatggctggtcgctggccaccaacaagctggtggatgtcggcgaggcc
gttggcatcgtggccgcacagtccatcggcgagcctggtacccagctgacgttgcgttcc
ttccactccggtggcgttgcttccgcatccgatatcacccagggtctccctcgtgttacc
gagcttttcgaagcccgtactccgaagggtgaggccccgatcgcagagttcgctggcgtg
gtcaaggtggaagacaccgagcgcggccgtcaggtcatcctgaagccggacgacgattcc
gtcgagccgatcgcctacccggtgacccgtcgcgccccgatgatggtcaaggacggcgat
catgtcgaagccggcacccagctgatcgaaggctccgtcgatcctaagaagatcctgcgc
atcctcggcccgcgtgctgcccaggtgaacattgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgataagcacatcgaggtcatcgtgcaccagatgctgcgt
cgtatcacggtgatcgattccggcgataccgaccttcttccgggtgaactggtggatcag
gcccgcttcaaggccgccaatatgaaggccgtgaaggaaggtggcaagcctgctgccggt
cgtccggagctgatgggcatcaccaaggcctcgctggcaaccgattcctggctgtccgcg
gcttccttccaggagaccacccgcgtgcttaccgaagccgctctgagccagaaggtcgat
gacctcaagggcctcaaggagaacgtcatcatcggtaagctcatcccggcaggtaccggc
cttgcccgttaccgtaacgccgtggtcgagcctgacaaggccattcgcgacaccatctac
ccgaacttcggtttgggtggcgacgagtccgatgccgccttcggcgacgccgatctgtcc
gaagtcgacttctcgaacatcgacttcggagatctgaagctcggcgacgacttcaatccg
gatgacttcctggacgacaatggcggtcagatggatttgggcgacaccctgtga
DBGET
integrated database retrieval system
