Burkholderia pseudomallei MSHR520: BBX_1278
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Entry
BBX_1278 CDS
T03163
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family domain protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bpsd
Burkholderia pseudomallei MSHR520
Pathway
bpsd03030
DNA replication
bpsd03430
Mismatch repair
bpsd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBX_1278
03430 Mismatch repair
BBX_1278
03440 Homologous recombination
BBX_1278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsd03032
]
BBX_1278
03400 DNA repair and recombination proteins [BR:
bpsd03400
]
BBX_1278
Enzymes [BR:
bpsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBX_1278
DNA replication proteins [BR:
bpsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBX_1278
DNA repair and recombination proteins [BR:
bpsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBX_1278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AHK66677
LinkDB
All DBs
Position
1:1383058..1384203
Genome browser
AA seq
381 aa
AA seq
DB search
MSASPPPHPAIDTPLAFVDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPP
FIQQLTGITDAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP
DVLCTVRLSRALFPRESRHGLDALIERHALAPSARHRALADADLIWQFWQKLHAVIPAEQ
LSEQIVRTTRRFRLAGALTEAHLESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLT
GERRSSKETRLAQLVRRVEWRETGGELGALLAEADWIASLAPSFNRRSDRGATGDAHWPF
GGPVAFEERGESRVFHVIDQWRYVGAASSIERAATLAADARAAGEGARSAAPAVRRILQT
HLARGLQLIPIPLAGAAPAAA
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcgccgccgccgcatcccgcgatcgacacgccgctcgcgttcgtcgacctc
gaaaccaccggcggatcggccgccgagcatcgcatcaccgaaatcggcgttgtcgtcgtg
aacgcgaacggcgtatcgacatggacgacgctcgtcgatccgcagcagccgattcccccg
ttcatccagcagctcacgggtatcaccgacgcgatggtgcgcggcgcgccgacgtttgcc
gacattgcgggcgcattgttcgagcggctcgacggcaaacttttcgtcgcgcacaacgcg
agcttcgaccgaggctttctgcgcgcggagttcgagcgagcgggcatcgcattcaatccc
gacgtgctttgcacggtgcggctgtcgcgcgcgcttttcccgcgcgagtcgcgccatggg
ctcgacgcgctgatcgagcggcacgcgctcgcgccgtcggcacgccaccgggcgctcgcc
gacgcggatctcatctggcagttctggcaaaagttgcatgccgtgataccggccgagcaa
ctgagcgagcagatcgtgcgcacgacgcgccggttcaggctcgcgggggcgttgacggaa
gcgcatctggaaagcgcgcccgccggctgtggcgtctacgcgctgttcggcgacggcgac
gcgccgctctatgtcggccgaagcgtgcgggttcgccagcggctgcgcgcgctgctgacg
ggggagcggcgctcgtcgaaggaaacacggctcgcgcagctcgtgcggcgggtcgaatgg
cgcgagacgggcggcgagctcggcgcgctgcttgccgaggcggactggatcgcgtcgctt
gcgccatcgttcaaccggcggtcggaccgcggcgcgacgggcgatgcgcattggccgttc
ggcgggccggtcgcgttcgaggagcgcggcgaatcgcgtgtttttcatgtgatcgatcag
tggcgctacgttggcgcggcatcgtcgatcgagcgggcggcgacgctcgcggccgacgcg
cgcgcggcgggcgaaggcgcgcggagcgccgcgccggcggtgcgccgcattctgcagacg
catctcgcgcgcgggcttcaactgattccgattccgctcgcgggcgccgcgcctgccgcc
gcctaa
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