Burkholderia pseudomallei MSHR520: BBX_567
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Entry
BBX_567 CDS
T03163
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpsd
Burkholderia pseudomallei MSHR520
Pathway
bpsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBX_567 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsd03021
]
BBX_567 (rpoB)
03400 DNA repair and recombination proteins [BR:
bpsd03400
]
BBX_567 (rpoB)
Enzymes [BR:
bpsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBX_567 (rpoB)
Transcription machinery [BR:
bpsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBX_567 (rpoB)
DNA repair and recombination proteins [BR:
bpsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBX_567 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
AHK65234
LinkDB
All DBs
Position
1:616680..620786
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVPTAQRKSEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTLRVD
ETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYMIAQANAAIGDDGALVDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAVQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLREGVPFAT
PVFDGATEEEMSKMLDLAFPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgttccatc
gttcaccaagtgcctttcctgctggccacccagcttgaatcattcagcacatttctgcaa
gccgatgtgcccaccgcgcaacgcaagtccgaggggttgcaggccgccttcacgtcggtg
tttcccatcgtctcgcataacggcttcgctcgtctcgagttcgtgagctatgcgttgtcg
tcgccggcgttcaacatcaaggaatgtcagcagcgcggcctgacctactgctcggcgctg
cgcgcgaaggtgcgcctcgtgctcctcgacaaggagtcgccgagcaagcccgtcgtcaag
gaagtgaaggaacaggaagtgtacatgggcgagattccgctcatgacgccgaccggttcg
ttcgtcatcaacggcaccgagcgcgtgatcgtgtcgcagttgcaccgttcgcccggcgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttctccgcgcgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacgtgctgtat
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggcgatcggcctc
acgcctgagcagatcctcgcgaacttcttcgtcttcgacaacttcacgctgatggacgaa
ggcgcgcagatggagttcgtgcccgagcgtctgcgcggcgaagtcgcgcgcttcgacatc
accgatcgcgaaggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgatctcgaagccgcgaagaccaagtacatctcggtgcccgaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacacgggtgaagtgatcgcgaacgcgaac
gacgagatcaccgaaggcgtgctcgagaagctgcgcgaagcgaagatcaaggaaatccag
acgctctacacgaacgatctggaccagggcccgtacatctcgtcgacgctgcgcgtggac
gaaaccgtcgacaagacggccgcgcgcatcgcgatctaccggatgatgcgcccgggcgag
ccgccgacggaagaagccgtcgaggcgctcttcaaccgcctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgcatgaagttcaaccgccgcgtcggccgtgacgagatc
acgggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtcgacgacatcgaccacctcggcaatcgtcgcgtgcgc
tgcgtcggcgaactggcggaaaaccagttccgcgcgggcctggtgcgcgtcgagcgcgcg
gtgaaggaacgtctcggccaggccgagagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgcgtgtccgcactgggc
ccgggcggtctcacgcgcgagcgcgccggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgtccgatcgagacgccggaaggtccgaacatcggcctcatcaactcg
ctcgcactgtacgcgcacctgaacgaatacggcttcctcgagacgccgtaccgcaaggtc
gtcgacagcaaggtgaccgaccagatcgactatctgtcggcgatcgaggaaggccgctac
atgatcgcgcaggcgaacgccgcgatcggcgacgacggcgcgctcgtcgacgagctggtg
tcgtcgcgcgaagccggcgaaacgatgatggtcacgccggaccgcatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggtggcagcctcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggagaagcccgtcgtcggtaccggcatcgagcgcaccgtggcggtcgactcgggcacg
acggtgcaggcgctgcgcggcggcgtcgtcgattacgtcgacgcgggccgtatcgtcatt
cgcgtgaacgatgacgaagcggtcgcgggcgaagtcggcgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaatcagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgatggcgcatcgaccgacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagcgcgtcgtcgcggacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgtcgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctcgcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gcggaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtccaggtgttc
acgcgcgaaggtatccagcgtgacaagcgcgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctggacttgaacgaccagctgcgcatcgtcgaaggcgacgcattccagcgt
ctcgcgcgcatgctcgtcggcaaggtcgcgaatggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcgtacctggaggatctcgaccactaccactggttcgacatccgc
ctcgcggacgacgaagcggccgtgcagctcgaagcgatcaagaactcgatcgaagagaag
cgccaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgccgcctgcag
cctggcgacaagatggcgggccgtcacggtaacaagggtgtcgtgtcgaagatcgttccg
gtcgaagacatgccgtacatggccgacggccgtccggccgacgtcgtgctgaatccgctc
ggcgtgccgtcgcggatgaacgtggggcaggtcctggaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgagatgctcgcgcgtcagacgaagatcgaagagctg
cgtgtgttcctgacgaagatctacaacgagtcgggccgtgcggaagacctcgagagcttc
agcgacgacgaaatcctcgaactcgcgaagaatctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgtcgaagatgctcgacctcgcgttcccg
gacgacatcgccgaacagctcgacatgaatccgtcgaagaaccaggtgcgcctgtacgac
ggccgcacgggcgagccgttcgagcgccgcgtgacggtgggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgacgggcccgtactcgctcgtc
acgcagcagccgctcggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaa
gtgtgggcgctcgaagcgtatggcgcttcgtacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggaccaaggtttatgaaaacctggtcaagggcgaccatgtc
atcgacgccggcatgcccgagtcgttcaacgtgttggtgaaggaaatccggtcgctcggt
atcgacatcgacctggaccggaactaa
DBGET
integrated database retrieval system
