KEGG   Burkholderia pseudomallei MSHR305: BDL_419
Entry
BDL_419           CDS       T02756                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bpse  Burkholderia pseudomallei MSHR305
Pathway
bpse02024  Quorum sensing
bpse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BDL_419 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BDL_419 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpse03019]
    BDL_419 (hfq)
   03036 Chromosome and associated proteins [BR:bpse03036]
    BDL_419 (hfq)
Messenger RNA biogenesis [BR:bpse03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BDL_419 (hfq)
Chromosome and associated proteins [BR:bpse03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BDL_419 (hfq)
SSDB
Motif
Pfam: Hfq Mucin-like LSM Hfq_1 SelB_WH1 EDC3_N
Other DBs
NCBI-ProteinID: AGR72378
LinkDB
Position
2:525047..525697
AA seq 216 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
RESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
QEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ
NT seq 651 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgactgacgggttgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcccgtccgggcggacgcggcccgcgc
gcgggcggcgcccacggcggcggcggacgccccggcggacgcgaaggcggcggtcatggc
ccgtacggctcgcacggcggctcgcgcgaaccccgcggcgacggcggcggctatggcgct
cgcgaatcgcgcggcgacggcggttatggctcccgcgaatcgcgcggtgacggcggctac
ggttcccgcgaaccgcgcggcgacggcggctacggctcccgcgaaccgcgtggcgacggc
ggctatggcgcgcgcgagccgcgtgaaccgcgcgagccccgcgagtcttacggcgcgccg
caagaaggcgcatcgacgccgtccggcacgcaggaacgcaacggcaacggcaacggcccg
gtgatcgtcacgcgccgtcgccgttcgctcggcccgaccgacggccaataa

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