Burkholderia pseudomallei HBPUB10134a: DR55_2979
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Entry
DR55_2979 CDS
T03422
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpsh
Burkholderia pseudomallei HBPUB10134a
Pathway
bpsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR55_2979 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsh03019
]
DR55_2979 (rnr)
03016 Transfer RNA biogenesis [BR:
bpsh03016
]
DR55_2979 (rnr)
Enzymes [BR:
bpsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DR55_2979 (rnr)
Messenger RNA biogenesis [BR:
bpsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR55_2979 (rnr)
Transfer RNA biogenesis [BR:
bpsh03016
]
Prokaryotic type
tRNA degradation factors
DR55_2979 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
RcsD_ABL
Phage_TAC_18
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
AIP52143
LinkDB
All DBs
Position
1:complement(3442826..3445264)
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AA seq
812 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQNAKKAKVGQVV
VVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAALPDKV
RPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSHYVQPG
SPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVYKALFVARQKRGAID
FDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNTALSPR
ARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEAGAGGPRVRALPPAEGAARRKKAAS
APSAAVKEARAARKKGAASKPAAKKARSRKKY
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtatccgtatcccatcccgagccgcgaagagattctcggcgtgctgcgcacg
agcgacgcgccgcttgcggcgaacgacatcgccgaagcgctgtcgatcaagcgtcaggag
cgcgaaggatttttccggcgcgtcgccgcgatggagcgcgacggccagatccgtctcgac
aagcgcggtcattatcaactgacgcatccgtccaacttcgtcgcgggccgcgtgcaaggc
caccgcgacggctacggcttcgtgattcgcgacgacgggcaggatgatctgttcctgccg
aacgccgagatgcaaaaggtcatgcacaacgaccgcgtgctggcgcggatcgtcggctac
gatcggcgcggccggccggaagggcacgtcgtcgaggtgaccgagcgggcgaacaagcgc
gtgatcgggcgcctcctgaacgagaacggcgcgctcatcgtcgcgcccgaggacaagcgg
atcagtcacgacatcctcgtcacgcagaacgcgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagctcaccgatttcccgagccgtcattcgcagccgctcggccgcgtctgcgaa
gtgctcggcgatatcgacgatcccggcatggagatcgagatcgcggtgcgcaagtacggc
gtgccgcacgaattcggcgcgcaagcgctcggcgaggccgcggcgctgccggacaaggtg
cggcccgcggatctgcgctaccgcgtcgacttgcgcgacgtgccgctcgtcacgatcgac
ggcgaggacgcgcgcgacttcgacgacgccgtgtactgcgagcccgccgcggtcggccgc
ggcgagggcttccggctcatcgtcgcgatcgcggacgtgtcgcactacgtgcagccaggc
agcccgctcgacgccgacgcggtcgaacgcagcacgtcggtctatttcccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacgggctctgctcgctgaatccgcaggtcgat
cgctgcgtgctcgcgtgcgacatgatcatcaacgcgcgtggcgacatcaaggcgtatcag
ttctatccggccgtgatccactcggccgcgcggctcacgtacaccgaagtggccgcggtg
ctctcgaacacgaaggggccggaggccgcgcgccgcgccgagctgatgccgcacctgcag
cacctgtacggcgtctacaaggcgctcttcgtcgcgcggcagaagcgcggcgcgatcgac
ttcgacacgaccgagacgtacatcgtctgcaacgcacagggcaagatcgagcagattctg
ccgcgccagcgtaacgacgcgcatcggctgatcgaggaatgcatgcttgccgcgaacgtc
tgcgcggccgatttcctcaagcgcaacaagcacccgggcctctaccgcgtgcacgcgggg
ccgacgcccgaaaagctcgagaatctgcgcgcgttcctgcgcgacatggggctcacgctg
ggcggcggcgacacgccgcacgcgagcgattacgcggcgctgatggcgcacatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggcggtctac
agtccggacaacatcggccacttcggtctcgcgtacgacgcgtacgcgcacttcacgagc
ccgattcgccgctatcccgatctgctcacgcaccgcgcgatctacgcgatcctgtccggc
aagaagtacacgccgaagtcgccggaaggcgtcgagctgaacaccgcgctgtcgccgcgc
gcgcgcgcgatgcagcgcgaggacgacgaggcgcgcggccgcgcgcggtcgaacgcggcg
atctgggaggagctcgggctgcactgttcgtccaacgagcggcgcgcggacgaagcgtcg
cgcgacgtcgaggcatggctcaagtgctatttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgatgcgcttttc
atcgaaggcctcgtgcatgtgaccgagctcggcgccgattattttcagtacgacgaagtc
aagaacgaactgcgcggcgagcgcacgggcattcgctaccggctgtccgaccgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgatttccgcctcgtgcgcgag
acgcccgtgaaggcgccgcgcccggcatcggcggtggcggccgaagcgggcgcgggcggg
ccgcgtgtgcgcgcgctgccgcccgccgaaggcgccgcgcgacgcaagaaggccgcgagc
gcgccgagcgcggcggtgaaggaggcccgggcggcccgcaagaagggcgccgcgtcgaag
ccggccgcgaagaaggcgcgttcgcgcaagaagtactga
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