KEGG   Burkholderia pseudomallei HBPUB10134a: DR55_2994
Entry
DR55_2994         CDS       T03422                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bpsh  Burkholderia pseudomallei HBPUB10134a
Pathway
bpsh02024  Quorum sensing
bpsh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DR55_2994 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DR55_2994 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsh03019]
    DR55_2994 (hfq)
   03036 Chromosome and associated proteins [BR:bpsh03036]
    DR55_2994 (hfq)
Messenger RNA biogenesis [BR:bpsh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DR55_2994 (hfq)
Chromosome and associated proteins [BR:bpsh03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DR55_2994 (hfq)
SSDB
Motif
Pfam: Hfq Mucin-like LSM Hfq_1 SelB_WH1 EDC3_N
Other DBs
NCBI-ProteinID: AIP50321
LinkDB
Position
1:3461442..3462086
AA seq 214 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
REPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
QEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ
NT seq 645 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgactgacgggttgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcccgtccgggcggacgcggcccgcgc
gcgggcggcgcccacggcggcggcggacgccccggcggacgcgaaggcggcggtcatggc
ccgtacggctcgcacggcggctcgcgcgaaccccgcggcgacggcggcggctatggcgct
cgcgaaccgcgtggcgacggcggttatggctcccgcgaatcgcgcggcgacggcggctac
ggctcccgcgaaccgcgtggcgacggcggctacggttcccgcgaaccgcgtggcgacggc
ggctatggcgcgcgcgagccgcgtgaaccgcgcgagccccgcgagtcttacggcgcgccg
caagaaggcgcatcgacgccgtccggcacgcaggaacgcaacggcaacggcccggtgatc
gtcacgcgccgtcgccgttcgctcggcccgaccgacggccaataa

DBGET integrated database retrieval system